Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 8.7e-99 363.6 180 100.0
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 8.7e-99 363.6 180 100.0
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 5.8e-87 324.3 180 86.7
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.9e-86 322.0 181 86.2
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.8e-86 321.6 181 86.2
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 3.8e-86 321.6 178 86.0
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 4.9e-86 321.2 178 86.5
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.1e-85 320.1 179 87.7
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.4e-85 318.9 179 86.0
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.2e-85 318.2 180 85.0
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 83.4
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 84.5
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 5.5e-85 317.8 180 83.3
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 5.5e-85 317.8 181 85.1
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 9.3e-85 317.0 179 85.5
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 9.3e-85 317.0 181 84.0
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.2e-84 316.6 180 86.7
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 2.1e-84 315.8 181 84.5
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.1e-84 315.8 179 85.5
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 2.1e-84 315.8 181 83.4
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 2.7e-84 315.5 181 84.5
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.5e-84 315.1 180 83.9
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.5e-84 315.1 179 85.5
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 6.0e-84 314.3 180 83.3
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 6.0e-84 314.3 179 84.9
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 6.0e-84 314.3 179 84.9
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.0e-83 313.5 179 83.8
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 1.3e-83 313.2 202 77.7
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.0e-83 312.0 181 84.0
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.0e-83 312.0 179 83.8
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.0e-83 312.0 179 83.2
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 3.9e-83 311.6 179 82.7
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 6.7e-83 310.8 181 84.0
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.9e-82 309.3 181 82.9
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.9e-82 309.3 176 84.7
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 2.5e-82 308.9 181 82.3
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 2.5e-82 308.9 176 84.1
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 2.5e-82 308.9 176 84.1
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.3e-82 308.5 179 81.0
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 4.3e-82 308.1 182 82.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 4.3e-82 308.1 181 82.3
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 4.3e-82 308.1 179 82.1
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 5.6e-82 307.8 174 83.9
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 80.7
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 9.6e-82 307.0 176 83.5
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.3e-81 306.6 182 80.2
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 2.1e-81 305.8 176 83.5
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 4.8e-81 304.7 180 81.7
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 6.2e-81 304.3 181 82.3
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.1e-80 303.5 179 78.8
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.4e-80 303.1 179 78.8
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.8e-80 302.8 176 81.2
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.8e-80 302.8 179 79.9
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.4e-80 302.4 181 82.9
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.4e-80 302.4 167 86.2
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 4.0e-80 301.6 181 80.1
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 4.0e-80 301.6 181 80.7
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 4.0e-80 301.6 181 81.8
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 4.0e-80 301.6 181 81.8
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.3e-80 301.2 167 86.2
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 6.9e-80 300.8 172 83.1
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.5e-79 299.7 172 82.6
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 2.0e-79 299.3 168 86.3
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 2.0e-79 299.3 181 80.1
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 4.5e-79 298.1 181 79.6
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.8e-79 297.7 171 82.5
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 7.6e-79 297.4 180 82.2
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.7e-78 296.2 176 79.0
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.7e-78 296.2 171 81.9
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 2.9e-78 295.4 167 86.2
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 3.8e-78 295.0 175 79.4
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 8.4e-78 293.9 180 81.1
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.5e-77 292.4 169 82.8
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.2e-77 292.0 177 79.1
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.2e-77 291.6 180 80.6
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 5.5e-77 291.2 181 76.8
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.2e-76 290.0 178 78.7
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 2.1e-76 289.3 179 77.7
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.5e-76 288.5 177 78.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 3.5e-76 288.5 178 80.3
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.6e-76 288.1 181 77.3
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 4.6e-76 288.1 179 77.1
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 6.0e-76 287.7 180 78.3
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 6.0e-76 287.7 180 79.4
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 7.9e-76 287.3 177 78.0
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.0e-75 287.0 176 77.3
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 1.0e-75 287.0 182 78.6
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.3e-75 286.6 177 75.7
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.3e-75 286.6 177 79.7
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.3e-75 286.6 176 77.3
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.3e-75 286.6 177 79.7
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.3e-75 286.6 181 73.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.3e-75 286.6 169 79.9
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.8e-75 286.2 176 77.3
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.8e-75 286.2 168 81.0
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 2.3e-75 285.8 167 83.2
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 2.3e-75 285.8 176 76.7
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 3.0e-75 285.4 180 78.9
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.9e-75 285.0 176 76.7
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 3.9e-75 285.0 179 78.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 5.1e-75 284.6 178 79.8
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 6.7e-75 284.3 176 76.7
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 6.7e-75 284.3 176 76.7
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 6.7e-75 284.3 178 78.1
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 8.7e-75 283.9 176 76.7
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 8.7e-75 283.9 176 76.7
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 3.3e-74 282.0 200 72.5
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 7.4e-74 280.8 177 76.3
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 7.4e-74 280.8 177 76.3
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 7.4e-74 280.8 177 76.3
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 7.4e-74 280.8 183 76.0
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 9.6e-74 280.4 177 76.3
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.6e-74 280.4 161 83.2
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 2.1e-73 279.3 177 75.7
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 4.8e-73 278.1 165 78.8
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 4.8e-73 278.1 168 77.4
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 8.2e-73 277.3 177 75.7
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.8e-72 276.2 177 78.0
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.4e-72 275.8 168 78.6
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 6.9e-72 274.2 179 73.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.7e-70 269.6 172 74.4
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.7e-70 269.6 177 73.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.8e-70 268.5 181 72.4
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 8.5e-70 267.3 169 76.3
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.4e-69 266.5 178 72.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.2e-69 265.4 257 56.0
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.1e-68 262.7 149 84.6
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 4.6e-68 261.5 168 76.2
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 4.8e-65 251.5 177 67.2
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 1.2e-63 246.9 147 81.6
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.4e-63 245.4 178 70.2
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 7.7e-63 244.2 174 63.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.7e-62 243.0 177 65.5
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.0e-59 233.8 173 63.6
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 4.8e-49 198.4 167 56.3
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 8.2e-49 197.6 171 60.8
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.6e-47 193.4 134 70.9
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.8e-43 179.9 99 86.9
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.8e-41 172.6 101 86.1
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.2e-37 159.1 115 67.8
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.1e-32 142.5 80 85.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.3e-30 137.1 169 42.0
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.0e-27 127.5 69 88.4
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 4.4e-26 122.1 179 36.3
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-24 117.1 75 73.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-24 117.1 75 73.3
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.3e-21 105.9 54 90.7
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.3e-21 105.5 56 89.3
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.2e-20 104.0 100 56.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 3.6e-20 102.4 51 94.1
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 7.5e-18 94.7 165 37.0
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.3e-17 94.0 83 63.9
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 7.0e-16 88.2 62 67.7
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.2e-15 87.4 143 33.6
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-13 80.9 90 48.9
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 5.2e-11 72.0 37 89.2
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 5.2e-11 72.0 88 47.7
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 1.2e-10 70.9 45 71.1
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 2.0e-10 70.1 51 66.7
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 4.4e-10 68.9 38 89.5
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 8.3e-09 64.7 49 65.3
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.4e-08 63.9 35 80.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 3.2e-08 62.8 46 69.6
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 2.0e-07 60.1 33 81.8
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 8.6e-06 54.7 40 65.0


User provided reference genes

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