Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.1e-188 661.4 367 100.0
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.1e-100 370.9 325 72.9
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 8.2e-88 328.2 368 61.1
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 7.5e-73 278.5 308 62.3
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.4e-63 246.9 365 47.7
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 9.2e-63 245.0 378 46.8
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.6e-61 238.8 369 45.5
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.2e-59 234.6 394 44.7
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.6e-59 234.2 388 45.4
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.8e-59 233.4 370 44.3
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.8e-59 233.4 370 44.3
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 8.9e-58 228.4 358 48.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.2e-56 223.8 381 41.2
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.9e-56 222.6 358 49.2
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 6.4e-56 222.2 367 45.8
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.4e-55 221.1 386 41.7
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.4e-55 220.3 397 43.8
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 3.2e-55 219.9 385 42.6
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 5.4e-55 219.2 387 40.3
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.7e-53 214.2 389 41.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 5.0e-53 212.6 365 43.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 5.0e-53 212.6 394 43.7
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 8.6e-53 211.8 377 38.2
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.1e-52 211.5 333 46.8
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.1e-52 211.5 390 39.0
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.9e-52 210.7 379 42.5
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.9e-52 210.7 379 42.5
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.6e-51 207.6 387 42.6
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.1e-51 207.2 372 43.0
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.1e-51 207.2 362 44.8
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.1e-51 207.2 369 40.7
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 3.6e-51 206.5 334 47.6
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.7e-51 206.1 394 42.4
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 6.2e-51 205.7 391 40.2
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 8.0e-51 205.3 385 42.9
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 8.0e-51 205.3 358 45.5
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.1e-50 204.9 381 41.2
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.4e-50 204.5 386 43.0
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.4e-50 204.5 390 42.8
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.8e-50 204.1 364 43.1
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 4.0e-50 203.0 370 42.7
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 5.2e-50 202.6 369 42.5
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.0e-49 200.7 382 42.7
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 2.0e-49 200.7 358 43.3
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.0e-49 200.7 381 41.5
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.6e-49 200.3 392 42.3
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.4e-49 199.5 373 41.8
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.4e-49 199.5 379 41.2
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 5.8e-49 199.1 391 40.4
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 5.8e-49 199.1 379 41.2
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 5.8e-49 199.1 379 41.2
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 7.5e-49 198.7 360 39.4
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.3e-48 198.0 367 44.1
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.4e-48 195.7 363 45.7
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 8.3e-48 195.3 380 42.4
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 8.3e-48 195.3 379 42.0
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.4e-47 193.7 377 44.3
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 2.4e-47 193.7 363 44.1
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 3.2e-47 193.4 379 43.5
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 3.2e-47 193.4 359 45.7
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 7.0e-47 192.2 377 40.6
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 7.0e-47 192.2 365 41.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.2e-46 191.4 367 40.3
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.6e-46 191.0 379 42.5
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.7e-46 190.3 378 43.1
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 6.0e-46 189.1 377 42.2
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.0e-46 189.1 366 41.3
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 6.0e-46 189.1 377 39.3
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.3e-45 188.0 384 42.4
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.3e-45 188.0 358 44.7
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 2.3e-45 187.2 374 40.6
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.0e-45 186.8 368 38.0
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 3.9e-45 186.4 375 44.0
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 8.6e-45 185.3 380 40.3
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.1e-44 184.9 383 39.2
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.5e-44 183.7 357 42.6
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.1e-43 180.6 368 38.6
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 3.6e-43 179.9 394 42.6
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.4e-42 177.9 383 39.4
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.8e-42 177.6 357 38.7
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.0e-42 176.4 386 38.1
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 6.8e-42 175.6 362 39.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.9e-42 175.3 317 46.1
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 2.6e-41 173.7 374 39.6
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.8e-41 172.6 316 44.6
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 7.5e-41 172.2 366 42.1
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 9.9e-41 171.8 381 39.1
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.9e-40 170.2 316 44.3
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 4.9e-40 169.5 376 41.8
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 6.4e-40 169.1 361 37.7
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 8.3e-40 168.7 373 37.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.1e-39 168.3 370 38.1
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 2.4e-39 167.2 377 39.8
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 4.1e-39 166.4 351 37.0
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 4.1e-39 166.4 351 37.0
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.7e-38 163.7 370 41.4
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.7e-38 163.7 380 39.2
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 2.5e-36 157.1 323 43.3
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 6.2e-35 152.5 379 38.8
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.4e-33 146.7 258 41.5
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 4.9e-32 142.9 348 35.3
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.4e-31 141.4 383 32.1
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.9e-31 141.0 362 37.3
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.5e-30 136.7 382 31.7
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.1e-29 132.9 370 37.6
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.1e-29 132.9 370 37.6
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.2e-27 128.3 376 32.4
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.4e-26 124.8 365 32.1
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.4e-26 124.8 374 35.6
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 4.0e-26 123.2 367 33.2
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 4.0e-26 123.2 350 28.0
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.2e-26 122.9 167 54.5
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.2e-25 121.7 357 38.9
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.0e-25 120.9 369 31.2
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 2.6e-25 120.6 314 32.8
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 2.6e-25 120.6 314 38.5
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.3e-24 118.2 370 31.1
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.7e-24 117.9 368 34.0
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.7e-24 117.9 362 35.1
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 2.9e-24 117.1 324 34.9
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.9e-24 117.1 368 36.1
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.8e-24 116.7 314 32.5
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 4.9e-24 116.3 368 36.1
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.4e-23 114.8 299 33.8
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.4e-23 114.8 182 46.2
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 7.1e-23 112.5 242 47.1
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 9.3e-23 112.1 371 31.8
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 4.6e-22 109.8 206 44.7
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.0e-21 108.6 376 32.4
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 3.9e-21 106.7 233 45.1
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.9e-20 104.4 305 33.8
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 9.6e-20 102.1 333 30.9
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 6.2e-19 99.4 298 34.2
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-18 98.2 298 34.6
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.4e-17 93.6 374 30.5
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 9.9e-17 92.0 301 30.9
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-16 91.3 300 30.7
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.7e-16 91.3 342 30.4
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 1.7e-16 91.3 382 33.0
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 2.9e-16 90.5 295 33.9
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.4e-15 88.2 299 30.4
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.4e-15 88.2 307 32.2
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.4e-15 87.4 304 30.3
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 9.3e-15 85.5 299 30.1
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.7e-14 84.0 148 50.0
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.8e-13 81.3 288 31.2
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 9.6e-12 75.5 303 29.0
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 9.6e-12 75.5 303 29.0
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-11 74.7 291 30.6
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.1e-10 72.0 289 30.4
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 1.7e-08 64.7 298 28.9
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 2.2e-08 64.3 171 34.5
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 3.8e-08 63.5 299 28.8
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-07 61.6 169 34.3
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-07 61.6 169 34.3


User provided reference genes

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