Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 0.0e+00 1205.3 629 100.0
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.4e-259 898.3 628 73.6
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 6.5e-250 867.5 627 72.1
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.0e-247 860.1 632 71.0
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.5e-246 856.3 628 71.2
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 2.5e-246 855.5 626 69.3
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 3.4e-243 845.1 630 69.7
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 9.7e-238 827.0 628 67.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 6.3e-237 824.3 628 67.4
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.1e-236 823.5 625 69.0
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.4e-236 823.2 626 66.9
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 1.7e-234 816.2 631 68.1
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.2e-232 810.1 623 65.8
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.7e-229 799.7 621 66.5
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.8e-229 798.9 627 67.0
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 6.3e-229 797.7 623 65.0
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 6.9e-228 794.3 632 66.6
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 4.5e-227 791.6 656 64.9
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.6e-224 783.1 629 64.1
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 2.7e-224 782.3 628 64.0
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.7e-224 782.3 628 64.0
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.7e-224 781.6 628 64.0
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.6e-222 775.8 627 63.6
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 3.7e-221 771.9 569 69.2
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 4.1e-220 768.5 628 63.1
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 5.3e-220 768.1 628 63.1
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 7.0e-220 767.7 625 64.0
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.6e-219 765.8 632 61.9
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 4.5e-219 765.0 625 63.0
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 5.9e-219 764.6 624 63.8
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 5.0e-218 761.5 622 63.0
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 4.2e-217 758.4 624 63.3
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 8.0e-216 754.2 629 62.3
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 1.4e-215 753.4 626 62.1
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.8e-212 743.0 569 68.5
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 4.1e-212 741.9 619 61.9
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 3.5e-211 738.8 625 61.0
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 1.0e-210 737.3 623 62.1
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 3.8e-210 735.3 629 61.5
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 3.8e-210 735.3 637 60.9
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 5.0e-210 734.9 621 62.0
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 6.5e-210 734.6 660 59.4
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 8.5e-210 734.2 621 62.8
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.1e-209 733.8 621 62.6
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.5e-209 733.4 630 61.6
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.9e-209 733.0 623 61.5
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.2e-209 732.3 616 62.3
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 5.5e-209 731.5 623 62.1
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 9.4e-209 730.7 625 62.4
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 9.4e-209 730.7 625 62.4
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 9.4e-209 730.7 619 61.2
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 9.4e-209 730.7 586 66.4
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 6.1e-208 728.0 624 60.9
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 1.0e-207 727.2 625 62.2
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.4e-207 726.9 623 61.6
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.4e-207 726.9 628 61.0
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 2.3e-207 726.1 517 71.2
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 2.3e-207 726.1 666 59.0
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.0e-207 725.7 626 61.8
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.2e-206 723.8 625 60.5
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 2.0e-206 723.0 628 61.3
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.8e-205 719.2 625 60.6
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 4.8e-205 718.4 627 60.6
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 3.1e-204 715.7 641 59.3
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 9.1e-204 714.1 621 61.7
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 3.5e-203 712.2 631 59.3
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 4.5e-203 711.8 625 59.2
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 1.9e-201 706.4 633 59.9
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 2.0e-198 696.4 568 65.5
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 4.4e-198 695.3 625 57.8
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 2.2e-197 693.0 629 59.1
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 2.2e-197 693.0 626 58.1
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.4e-196 690.3 628 59.9
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.7e-195 686.0 511 69.1
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 3.5e-195 685.6 511 69.1
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 7.8e-195 684.5 606 59.1
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.3e-194 683.7 589 60.6
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 5.6e-193 678.3 625 57.4
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.8e-191 673.3 470 75.3
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 7.5e-190 667.9 570 62.8
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 2.0e-187 659.8 662 55.6
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-186 657.1 631 55.3
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 3.6e-184 649.0 534 63.9
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.7e-184 648.7 529 63.1
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.2e-182 644.0 512 65.6
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 5.8e-182 641.7 627 54.2
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.7e-178 630.2 630 55.6
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 2.8e-176 622.9 627 53.9
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.2e-176 621.7 559 59.7
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 3.5e-171 605.9 534 61.0
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 5.6e-169 598.6 625 53.6
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.5e-166 590.5 443 69.8
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 8.4e-165 584.7 656 50.5
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 5.1e-162 575.5 466 65.7
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 2.4e-159 566.6 604 54.3
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 6.0e-147 525.4 628 50.5
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 8.7e-138 495.0 474 55.7
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 7.4e-137 491.9 393 63.1
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 7.4e-129 465.3 586 47.8
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-124 451.4 357 66.1
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.8e-98 364.4 630 34.4
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 5.2e-90 336.3 382 52.9
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.5e-89 334.7 628 37.9
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 9.1e-87 325.5 638 32.8
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 5.2e-82 309.7 367 51.2
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 2.8e-80 303.9 516 41.5
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 2.8e-80 303.9 516 41.5
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 8.3e-80 302.4 619 31.7
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 5.0e-77 293.1 512 35.2
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 7.3e-76 289.3 382 47.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-68 265.4 260 51.9
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 7.8e-54 216.1 276 46.0
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 6.6e-53 213.0 274 45.3
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 3.1e-50 204.1 177 58.2
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.5e-44 185.3 381 33.9
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 2.9e-40 171.0 145 63.4
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 6.4e-40 169.9 160 56.9
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 3.2e-39 167.5 222 46.8
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.2e-39 167.2 130 70.0
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.2e-38 165.6 176 52.3
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 7.8e-38 162.9 165 51.5
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.7e-37 161.8 161 51.6
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 2.4e-34 151.4 171 43.9
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.5e-33 148.7 142 57.0
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.6e-30 137.1 403 30.0
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 7.9e-30 136.3 137 55.5
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.5e-28 132.1 363 33.6
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 3.7e-27 127.5 347 33.4
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.4e-26 125.6 323 29.1
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 4.6e-22 110.5 149 40.9
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 8.2e-19 99.8 123 42.3
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.2e-19 99.8 59 79.7
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 1.4e-18 99.0 121 47.1
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 1.7e-16 92.0 59 71.2
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 8.4e-16 89.7 83 56.6
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 5.1e-13 80.5 77 50.6
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 1.9e-12 78.6 42 85.7
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 4.3e-12 77.4 77 55.8
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 4.8e-11 73.9 69 52.2
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 2.4e-10 71.6 118 35.6
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.5e-09 68.9 73 52.1
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.7e-08 65.5 92 42.4
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 8.5e-08 63.2 50 64.0
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.1e-07 62.8 43 67.4
SEGI_00815 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.1e-07 62.8 87 36.8
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 7.2e-07 60.1 130 35.4
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 1.6e-06 58.9 47 63.8
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.7e-06 58.2 33 81.8


User provided reference genes

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