Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.3e-191 672.9 339 100.0
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.3e-139 498.8 339 75.8
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 8.9e-137 490.7 328 75.3
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 8.3e-135 484.2 325 74.8
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.0e-129 467.2 325 72.9
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 3.7e-127 458.8 325 72.9
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 8.3e-127 457.6 327 72.8
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 7.0e-126 454.5 319 69.6
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 7.0e-126 454.5 332 70.5
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 2.0e-125 453.0 332 69.0
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.7e-124 449.9 330 69.4
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.9e-124 448.7 339 67.6
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.5e-123 446.8 325 67.7
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.5e-123 446.0 332 68.1
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.4e-120 435.3 329 70.2
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 7.5e-120 434.5 336 66.4
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.2e-119 433.0 334 64.7
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.1e-117 426.4 332 65.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.3e-116 423.7 334 67.1
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.3e-116 422.9 338 64.8
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 5.0e-116 421.8 332 65.1
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 5.6e-115 418.3 339 63.7
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-114 416.8 329 66.9
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.6e-114 415.6 326 67.5
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.6e-114 415.6 323 66.9
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.1e-114 414.5 336 63.7
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 8.1e-114 414.5 291 73.9
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 8.1e-114 414.5 325 64.3
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.1e-114 414.5 329 66.3
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.1e-113 414.1 336 62.8
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 3.1e-113 412.5 323 65.3
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.9e-113 411.0 328 65.9
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-112 410.6 336 61.6
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.5e-112 410.2 342 63.2
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 7.5e-112 407.9 324 65.7
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 9.9e-112 407.5 339 63.1
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 9.9e-112 407.5 328 65.2
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 9.9e-112 407.5 324 65.7
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.7e-111 406.8 328 62.8
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 2.9e-111 406.0 333 61.0
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.9e-111 406.0 334 61.1
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 6.4e-111 404.8 326 66.0
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 6.4e-111 404.8 260 77.3
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 8.3e-111 404.4 329 63.5
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-110 403.7 334 65.0
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.4e-110 403.7 330 65.5
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 3.2e-110 402.5 328 64.0
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 4.1e-110 402.1 329 62.9
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.1e-110 402.1 336 63.7
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 4.1e-110 402.1 324 65.4
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.4e-110 401.7 334 60.8
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.4e-110 401.7 330 61.8
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 5.4e-110 401.7 333 61.3
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 5.4e-110 401.7 337 62.3
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.1e-110 401.4 332 64.8
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 9.2e-110 401.0 330 61.2
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-109 400.2 334 64.7
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.6e-109 400.2 326 62.9
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.7e-109 399.4 329 60.2
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.6e-109 398.7 330 61.2
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 6.0e-109 398.3 340 61.8
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.3e-108 397.1 328 62.8
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.7e-108 396.7 327 64.2
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.3e-108 396.4 332 64.2
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.3e-108 396.4 339 60.8
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.0e-108 396.0 333 64.6
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.0e-108 396.0 334 63.8
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 3.9e-108 395.6 325 64.9
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 5.1e-108 395.2 335 60.0
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.6e-106 390.2 340 60.3
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.8e-106 389.4 327 61.2
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.8e-106 389.4 336 60.4
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 3.6e-106 389.0 337 61.4
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 8.1e-106 387.9 325 63.4
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-105 387.1 332 61.1
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 6.8e-105 384.8 330 60.9
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.2e-104 384.0 323 61.3
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.0e-104 383.3 338 61.2
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 2.6e-104 382.9 327 59.9
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 4.4e-104 382.1 333 58.0
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.9e-103 379.4 330 60.0
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 3.8e-103 379.0 303 63.4
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 3.8e-103 379.0 327 59.9
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 8.4e-103 377.9 281 69.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 8.4e-103 377.9 249 75.5
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.4e-102 376.3 332 59.3
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.2e-102 375.9 341 58.7
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.1e-101 373.2 357 56.9
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 4.6e-101 372.1 303 62.4
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 6.0e-101 371.7 306 63.7
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-100 370.9 329 59.9
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.3e-100 370.5 302 61.9
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.3e-100 370.5 322 60.9
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.3e-100 370.5 293 64.5
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.7e-100 370.2 315 60.6
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.7e-100 370.2 300 64.7
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 5.1e-100 368.6 337 57.3
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 5.1e-100 368.6 329 59.6
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.1e-100 368.6 326 59.5
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.6e-100 368.2 329 59.9
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-99 367.1 329 59.3
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 2.5e-99 366.3 328 59.1
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 4.3e-99 365.5 326 59.5
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 7.3e-99 364.8 325 59.1
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 7.3e-99 364.8 305 63.3
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.2e-98 364.0 302 63.2
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.1e-98 363.2 325 59.1
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 2.8e-98 362.8 325 58.5
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 2.8e-98 362.8 325 58.5
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 3.6e-98 362.5 347 56.2
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 6.2e-98 361.7 343 56.3
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.1e-98 361.3 353 56.7
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 8.1e-98 361.3 362 56.4
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.1e-97 360.9 301 64.1
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.4e-96 355.9 335 57.3
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 3.4e-96 355.9 277 65.3
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 3.4e-96 355.9 331 58.0
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 2.9e-95 352.8 297 64.3
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.4e-94 350.5 326 58.0
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 7.1e-94 348.2 334 56.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 9.3e-94 347.8 333 56.8
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.2e-93 347.4 292 64.0
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.2e-93 347.4 292 64.0
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 1.2e-93 347.4 286 65.0
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.1e-93 346.7 242 69.4
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 7.8e-93 344.7 310 58.1
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.3e-92 343.2 339 56.0
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-91 340.9 339 55.5
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.1e-91 340.9 337 54.0
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.6e-90 337.0 336 52.7
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 2.1e-90 336.7 334 54.2
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.1e-89 334.3 329 56.2
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.1e-89 334.3 333 54.1
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.1e-89 334.3 336 53.6
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.1e-89 334.3 335 53.4
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.4e-89 334.0 336 53.0
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.1e-89 332.8 297 59.9
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 3.1e-89 332.8 331 54.1
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 4.0e-89 332.4 286 61.5
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 9.0e-89 331.3 334 54.5
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.0e-88 330.1 336 52.4
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 5.8e-88 328.6 257 66.9
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.3e-87 327.4 331 53.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 2.5e-83 313.2 273 61.2
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 5.6e-83 312.0 254 61.4
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.4e-81 307.4 331 50.5
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.3e-79 300.8 290 55.2
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 7.1e-78 295.0 301 52.2
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 7.1e-78 295.0 322 50.9
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 6.0e-77 292.0 335 49.0
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.3e-74 284.3 285 52.3
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.5e-72 277.3 254 55.5
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-66 257.7 244 57.4
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 4.8e-66 255.8 161 74.5
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.4e-65 254.2 160 75.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 9.4e-62 241.5 231 57.1
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 2.1e-61 240.4 286 50.7
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.8e-60 237.3 179 61.5
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 6.7e-60 235.3 214 56.1
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.4e-57 226.9 154 72.1
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.7e-56 221.9 149 76.5
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.7e-53 213.4 244 50.4
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 8.2e-50 201.8 238 50.4
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 2.2e-42 177.2 235 46.4
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 8.2e-42 175.3 271 38.0
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.1e-41 172.9 175 50.9
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 6.7e-36 155.6 128 70.3
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.4e-33 147.1 89 77.5
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.2e-29 134.8 93 74.2
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.7e-29 132.9 80 78.8
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 1.0e-23 115.2 77 68.8
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.7e-23 114.4 79 72.2
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.1e-22 111.7 89 64.0
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.4e-20 104.8 130 41.5
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.8e-12 77.8 56 66.1


User provided reference genes

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