Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.9e-222 775.0 425 100.0
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.4e-178 628.6 347 86.7
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.0e-175 617.8 345 84.6
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 8.1e-172 607.4 345 81.7
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.4e-171 605.9 348 82.8
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.2e-170 603.6 346 83.2
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.6e-170 602.4 345 81.4
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 5.8e-170 601.3 343 82.2
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.4e-168 595.9 347 81.0
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.2e-168 595.5 348 81.9
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 3.2e-168 595.5 342 81.6
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 4.2e-168 595.1 346 80.6
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.5e-168 594.7 346 80.1
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.5e-168 594.7 339 83.2
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.1e-167 592.8 346 79.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.1e-167 592.8 345 82.6
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.6e-167 591.7 343 80.8
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 6.0e-167 591.3 343 81.0
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 6.0e-167 591.3 345 80.3
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 7.9e-167 590.9 349 80.2
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.9e-167 590.9 346 79.5
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 6.7e-166 587.8 346 79.8
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 2.5e-165 585.9 346 79.5
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 5.6e-165 584.7 344 79.7
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 9.6e-165 583.9 343 81.6
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 8.2e-164 580.9 346 78.6
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 4.0e-163 578.6 350 78.0
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 5.3e-163 578.2 343 79.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 5.3e-163 578.2 345 78.0
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 6.9e-163 577.8 347 78.7
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 9.0e-163 577.4 346 79.2
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 5.8e-162 574.7 348 78.4
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.0e-161 573.9 345 78.3
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.7e-161 573.2 344 78.8
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.7e-161 573.2 343 79.0
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.2e-161 572.8 348 77.6
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.2e-161 572.8 326 81.9
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 2.9e-161 572.4 345 78.6
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 8.4e-161 570.9 345 77.7
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 8.4e-161 570.9 342 79.2
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.4e-160 570.1 348 76.7
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.9e-160 569.7 346 77.7
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.5e-160 569.3 348 76.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 4.2e-160 568.5 345 78.0
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.1e-160 567.8 345 77.7
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 7.1e-160 567.8 339 79.9
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.2e-159 567.0 346 78.3
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.7e-159 565.8 342 79.5
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 7.9e-159 564.3 345 78.3
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.3e-158 562.8 343 78.7
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 3.0e-158 562.4 344 77.9
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 5.1e-158 561.6 342 78.1
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.1e-158 561.6 319 82.4
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.1e-157 560.5 339 78.5
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-157 560.5 339 78.5
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.5e-157 560.1 342 78.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.5e-157 560.1 341 77.7
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.5e-157 560.1 341 77.7
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.7e-157 558.1 348 77.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.7e-157 558.1 340 77.6
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 7.4e-157 557.8 342 78.1
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 7.4e-157 557.8 343 77.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.2e-156 556.2 347 76.9
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 3.7e-156 555.4 340 77.9
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 3.7e-156 555.4 340 77.9
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 4.8e-156 555.1 345 75.7
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 3.1e-155 552.4 340 77.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 4.1e-155 552.0 340 77.1
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 6.9e-155 551.2 349 75.1
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.6e-154 549.3 345 74.8
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.3e-153 547.0 338 76.6
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.2e-153 546.2 349 74.5
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 3.8e-153 545.4 345 72.8
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 8.5e-153 544.3 339 75.8
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.9e-152 543.1 338 76.0
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.9e-152 543.1 339 75.2
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.7e-151 539.3 347 75.5
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 4.6e-151 538.5 347 75.2
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 4.6e-151 538.5 341 75.1
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.4e-150 537.0 319 78.1
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 8.8e-150 534.3 337 73.9
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.1e-149 533.9 317 78.2
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.9e-149 533.1 335 76.4
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.5e-149 532.7 341 75.4
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 3.3e-149 532.3 348 72.1
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 4.3e-149 531.9 337 73.6
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 5.7e-149 531.6 347 73.8
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.7e-148 530.0 351 71.8
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 4.8e-148 528.5 356 70.8
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.4e-147 526.9 344 71.2
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 2.4e-147 526.2 340 73.2
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.2e-146 523.9 338 72.8
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.5e-146 523.5 352 73.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.5e-146 523.5 348 70.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.0e-146 523.1 347 71.8
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 2.0e-146 523.1 340 72.9
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.9e-146 521.5 309 79.3
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.0e-145 520.8 347 72.0
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.9e-145 519.2 348 71.8
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 3.8e-145 518.8 348 72.1
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 8.5e-145 517.7 354 70.9
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 8.5e-145 517.7 344 72.1
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 3.6e-143 512.3 341 71.0
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.0e-142 510.8 302 79.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.8e-142 510.0 347 70.3
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.5e-141 506.9 306 77.1
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.6e-141 506.1 345 70.4
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 4.4e-141 505.4 300 78.7
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 7.0e-139 498.0 339 69.9
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 1.2e-138 497.3 345 68.7
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.0e-138 496.5 350 70.6
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 3.4e-138 495.7 341 71.3
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 3.2e-136 489.2 355 66.5
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 4.7e-135 485.3 344 68.6
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 8.2e-132 474.6 338 66.9
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 7.2e-128 461.5 335 66.0
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 9.4e-128 461.1 349 65.3
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.2e-127 460.7 330 68.2
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.2e-124 449.9 336 65.8
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.8e-124 449.5 347 64.8
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.8e-123 446.8 313 66.1
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.5e-122 442.2 301 67.4
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 7.7e-122 441.4 342 62.3
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-120 436.8 284 74.3
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.7e-119 432.2 231 84.4
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.8e-116 422.9 324 64.5
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.7e-114 416.4 304 67.8
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 4.7e-111 405.6 328 58.8
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 4.4e-109 399.1 340 58.2
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.7e-108 397.1 316 63.9
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.0e-105 387.9 346 57.5
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.7e-100 370.5 206 83.0
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.2e-100 370.2 198 85.4
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.5e-93 347.4 198 79.3
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 7.0e-91 338.6 219 74.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 9.2e-91 338.2 221 74.7
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.5e-88 330.9 177 86.4
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 3.4e-85 319.7 231 67.1
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.1e-83 314.7 254 59.4
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.4e-77 293.1 229 62.9
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.7e-76 290.8 399 39.8
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.1e-75 288.1 209 66.0
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 6.6e-73 278.9 304 45.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 4.0e-70 269.6 342 41.2
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.5e-69 267.7 221 59.7
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 3.6e-63 246.5 352 40.6
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 5.8e-53 212.6 182 58.2
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 3.0e-49 200.3 362 35.4
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.7e-49 199.1 125 76.8
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.0e-37 161.0 116 69.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.5e-36 156.0 148 54.7
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 3.3e-32 143.7 138 55.8
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.1e-26 122.9 66 84.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 5.5e-19 99.8 56 78.6
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 9.1e-06 55.8 43 62.8


User provided reference genes

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