Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1333 Trochodendron aralioides HOM05D003374 ORTHO05D009415 6.7e-107 390.6 183 100.0
Nn6g31909 Nelumbo nucifera HOM05D003374 ORTHO05D009415 1.3e-57 226.9 121 86.8
CiPaw.13G118300 Carya illinoinensis HOM05D003374 ORTHO05D009415 1.1e-56 223.8 122 84.4
CiPaw.08G125700 Carya illinoinensis HOM05D003374 ORTHO05D009415 1.4e-56 223.4 122 84.4
Thecc.01G011400 Theobroma cacao HOM05D003374 ORTHO05D009415 4.1e-56 221.9 121 83.5
Sabra05G0088200 Salix brachista HOM05D003374 ORTHO05D009415 7.1e-56 221.1 122 81.1
CsaV3_3G000500 Cucumis sativus L. HOM05D003374 ORTHO05D009415 1.6e-55 219.9 122 81.1
Glyma.11G081000 Glycine max HOM05D003374 ORTHO05D009415 2.1e-55 219.5 119 80.7
Manes.01G150900 Manihot esculenta HOM05D003374 ORTHO05D009415 3.5e-55 218.8 122 82.8
Potri.005G107700 Populus trichocarpa HOM05D003374 ORTHO05D009415 1.7e-54 216.5 122 79.5
TAR376G1073 Trochodendron aralioides HOM05D003374 ORTHO05D009415 3.9e-54 215.3 122 82.0
GSVIVG01005194001 Vitis vinifera HOM05D003374 ORTHO05D009415 5.1e-54 214.9 122 79.5
Cpa.g.sc6.314 Carica papaya HOM05D003374 ORTHO05D009415 1.1e-53 213.8 121 81.0
Duzib147G1310 Durio zibethinus HOM05D003374 ORTHO05D009415 1.1e-53 213.8 121 80.2
Lalb_Chr05g0212171 Lupinus albus HOM05D003374 ORTHO05D009415 1.9e-53 213.0 119 81.5
TWI73G0214 Tripterygium wilfordii HOM05D003374 ORTHO05D009415 1.9e-53 213.0 122 78.7
Cfa007030 Carpinus fangiana HOM05D003374 ORTHO05D009415 2.5e-53 212.6 118 83.1
Ca_24943_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009415 2.5e-53 212.6 119 78.2
COL.COLO4_22496 Corchorus olitorius HOM05D003374 ORTHO05D009415 3.3e-53 212.2 121 79.3
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 3.3e-53 212.2 120 80.8
QL06p052083 Quercus lobata HOM05D003374 ORTHO05D009415 3.3e-53 212.2 119 80.7
Duzib147G0846 Durio zibethinus HOM05D003374 ORTHO05D009415 4.3e-53 211.8 121 79.3
Sopen02g028140 Solanum pennellii HOM05D003374 ORTHO05D009415 7.3e-53 211.1 122 77.9
Medtr5g022990 Medicago truncatula HOM05D003374 ORTHO05D009415 1.2e-52 210.3 122 75.4
PGSC0003DMG400003664 Solanum tuberosum HOM05D003374 ORTHO05D009415 1.2e-52 210.3 122 77.9
Rhsim10G0205600 Rhododendron simsii HOM05D003374 ORTHO05D009415 1.6e-52 209.9 122 77.9
Solyc02g083360.1 Solanum lycopersicum HOM05D003374 ORTHO05D009415 2.1e-52 209.5 122 77.0
Aqoxy6G01987 Aquilegia oxysepala HOM05D003374 ORTHO05D009415 2.8e-52 209.1 122 77.9
PSO541G5712 Papaver somniferum HOM05D003374 ORTHO05D009415 2.8e-52 209.1 122 78.7
Oeu050858.1 Olea europaea HOM05D003374 ORTHO05D009415 3.6e-52 208.8 121 76.0
Oeu022072.1 Olea europaea HOM05D003374 ORTHO05D009415 4.7e-52 208.4 121 75.2
CSS0011665 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 6.2e-52 208.0 122 76.2
DCAR_014045 Daucus carota HOM05D003374 ORTHO05D009415 6.2e-52 208.0 122 76.2
Atru.chr3.908 Acer truncatum HOM05D003374 ORTHO05D009415 8.1e-52 207.6 122 75.4
CAN.G890.27 Capsicum annuum HOM05D003374 ORTHO05D009415 8.1e-52 207.6 122 77.0
SGA_v2.0_scaffold16G07586 Striga asiatica HOM05D003374 ORTHO05D009415 8.1e-52 207.6 122 77.9
THA.LOC104807515 Tarenaya hassleriana HOM05D003374 ORTHO05D009415 1.1e-51 207.2 122 78.7
MD02G1123500 Malus domestica HOM05D003374 ORTHO05D009415 1.8e-51 206.5 122 76.2
Ciclev10026501m.g Citrus clementina HOM05D003374 ORTHO05D009415 2.4e-51 206.1 132 69.7
Eucgr.J02491 Eucalyptus grandis HOM05D003374 ORTHO05D009415 2.4e-51 206.1 122 76.2
Gorai.003G005800 Gossypium raimondii HOM05D003374 ORTHO05D009415 3.1e-51 205.7 121 75.2
Lsat_1_v5_gn_2_75400 Lactuca sativa HOM05D003374 ORTHO05D009415 6.8e-51 204.5 122 75.4
Prupe.7G175100 Prunus persica HOM05D003374 ORTHO05D009415 6.8e-51 204.5 119 76.5
Sc16g0001810 Simmondsia chinensis HOM05D003374 ORTHO05D009415 6.8e-51 204.5 122 73.8
Cc07_g11320 Coffea canephora HOM05D003374 ORTHO05D009415 8.9e-51 204.1 122 74.6
Cc08_g04870 Coffea canephora HOM05D003374 ORTHO05D009415 8.9e-51 204.1 122 74.6
PSO675G5709 Papaver somniferum HOM05D003374 ORTHO05D009415 1.5e-50 203.4 122 76.2
CSS0020449 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 2.6e-50 202.6 122 74.6
BcaC06g36302 Brassica carinata HOM05D003374 ORTHO05D009415 3.4e-50 202.2 122 74.6
Gohir.D03G005400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 3.4e-50 202.2 121 73.6
TPR.G25106 Trifolium pratense HOM05D003374 ORTHO05D009415 3.4e-50 202.2 119 73.9
C07p05590 Brassica napus HOM05D003374 ORTHO05D009415 4.4e-50 201.8 122 74.6
Dinv40145 Davidia involucrata HOM05D003374 ORTHO05D009415 4.4e-50 201.8 108 82.4
Sp3g31110 Schrenkiella parvula HOM05D003374 ORTHO05D009415 4.4e-50 201.8 122 76.2
AL3G50700 Arabidopsis lyrata HOM05D003374 ORTHO05D009415 5.8e-50 201.4 122 73.8
Thhalv10023081m.g Eutrema salsugineum HOM05D003374 ORTHO05D009415 5.8e-50 201.4 122 73.8
Ah.03g134290 Amaranthus hybridus HOM05D003374 ORTHO05D009415 7.6e-50 201.1 122 73.0
Gohir.A02G174400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 7.6e-50 201.1 121 75.2
ATR0661G346 Amborella trichopoda HOM05D003374 ORTHO05D009415 1.7e-49 199.9 118 76.3
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.7e-49 199.9 107 81.3
SalBow7G1184 Salvia bowleyana HOM05D003374 ORTHO05D009415 1.7e-49 199.9 121 76.0
AT2G17705 Arabidopsis thaliana HOM05D003374 ORTHO05D009415 2.9e-49 199.1 122 73.0
BcaB03g16543 Brassica carinata HOM05D003374 ORTHO05D009415 2.9e-49 199.1 121 73.6
BraA07t28129Z Brassica rapa HOM05D003374 ORTHO05D009415 3.8e-49 198.7 122 73.8
Lj2g0014685 Lotus japonicus HOM05D003374 ORTHO05D009415 3.8e-49 198.7 120 75.0
CARHR107990 Cardamine hirsuta HOM05D003374 ORTHO05D009415 4.9e-49 198.4 122 73.0
FvH4_1g11071 Fragaria vesca HOM05D003374 ORTHO05D009415 8.4e-49 197.6 122 73.8
CANSAT25G2243 Cannabis sativa HOM05D003374 ORTHO05D009415 1.1e-48 197.2 122 73.0
Migut.C00507 Erythranthe guttata HOM05D003374 ORTHO05D009415 1.4e-48 196.8 120 73.3
Carub.0003s3181 Capsella rubella HOM05D003374 ORTHO05D009415 2.4e-48 196.1 122 71.3
Phvul.002G104600 Phaseolus vulgaris HOM05D003374 ORTHO05D009415 2.4e-48 196.1 119 73.1
Psat2g152000 Pisum sativum HOM05D003374 ORTHO05D009415 7.1e-48 194.5 119 69.7
MBI05_g46750_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009415 2.1e-47 193.0 107 79.4
RcHm_v2.0_Chr2g0098341 Rosa chinensis HOM05D003374 ORTHO05D009415 2.7e-47 192.6 122 72.1
HPP92_015019 Vanilla planifolia HOM05D003374 ORTHO05D009415 7.8e-47 191.0 118 72.0
HPP92_028513 Vanilla planifolia HOM05D003374 ORTHO05D009415 7.8e-47 191.0 118 72.0
Actinidia22936 Actinidia chinensis HOM05D003374 ORTHO05D009415 9.6e-45 184.1 100 81.0
MD15G1237300 Malus domestica HOM05D003374 ORTHO05D009415 2.1e-44 183.0 140 62.9
unitig_26.g9807 Utricularia gibba HOM05D003374 ORTHO05D009415 2.1e-44 183.0 117 71.8
Nitab4.5_0002105g0060 Nicotiana tabacum HOM05D003374 ORTHO05D009415 3.6e-44 182.2 100 78.0
SEGI_17874 Sequoiadendron giganteum HOM05D003374 ORTHO05D009415 3.6e-44 182.2 119 66.4
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 6.2e-44 181.4 107 74.8
Aa31LG8G14980 Aethionema arabicum HOM05D003374 ORTHO05D009415 6.9e-43 177.9 105 73.3
Zm00001eb002870 Zea mays HOM05D003374 ORTHO05D009415 1.5e-42 176.8 118 66.9
HanXRQChr14g0442031 Helianthus annuus HOM05D003374 ORTHO05D009415 2.6e-42 176.0 113 67.3
Nitab4.5_0006892g0030 Nicotiana tabacum HOM05D003374 ORTHO05D009415 2.6e-42 176.0 100 76.0
Os03g0136500 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009415 3.4e-42 175.6 118 66.1
MSTRG.25049 Avicennia marina HOM05D003374 ORTHO05D009415 6.4e-41 171.4 103 72.8
MELO3C013742.2 Cucumis melo HOM05D003374 ORTHO05D009415 1.9e-40 169.9 94 76.6
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 9.3e-40 167.5 100 74.0
Sed0013270 Sechium edule HOM05D003374 ORTHO05D009415 4.3e-37 158.7 94 72.3
AagrBONN_evm.TU.Sc2ySwM_362.2709 Anthoceros agrestis HOM05D003374 ORTHO05D009415 1.3e-36 157.1 115 59.1
SMO013G0010 Selaginella moellendorffii HOM05D003374 ORTHO05D009415 2.8e-36 156.0 116 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2707 Anthoceros agrestis HOM05D003374 ORTHO05D009415 6.4e-33 144.8 118 55.9
Sc16g0001870 Simmondsia chinensis HOM05D003374 ORTHO05D009415 1.2e-31 140.6 84 72.6
Mapoly0037s0042 Marchantia polymorpha HOM05D003374 ORTHO05D009415 1.8e-27 126.7 115 47.8
Pp3c17_11570 Physcomitrium patens HOM05D003374 ORTHO05D009415 1.8e-27 126.7 117 47.9
Pp3c1_28090 Physcomitrium patens HOM05D003374 ORTHO05D009415 5.3e-27 125.2 117 49.6
Glyma.01G162300 Glycine max HOM05D003374 ORTHO05D009415 9.0e-27 124.4 72 73.6
Pp3c2_13370 Physcomitrium patens HOM05D003374 ORTHO05D009415 3.8e-25 119.0 117 47.0
CBR_g80133 Chara braunii HOM05D003374 ORTHO05D009415 6.7e-22 108.2 110 43.6
Actinidia17404 Actinidia chinensis HOM05D003374 ORTHO05D009415 5.7e-13 78.6 95 43.2
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 2.2e-09 66.6 129 31.8
Lj7P340T28 Lonicera japonica HOM05D003340 ORTHO05D003775 2.9e-09 66.2 125 31.2
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 5.0e-09 65.5 86 33.7
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 5.0e-09 65.5 90 32.2
Sabra05G0057400 Salix brachista HOM05D003340 ORTHO05D003775 5.0e-09 65.5 89 34.8
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 5.0e-09 65.5 129 30.2
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 1.1e-08 64.3 92 33.7
AagrBONN_evm.TU.Sc2ySwM_362.2682 Anthoceros agrestis HOM05D003340 ORTHO05D003775 1.9e-08 63.5 102 28.4
MSTRG.25383 Avicennia marina HOM05D003340 ORTHO05D003775 1.9e-08 63.5 132 29.5
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 1.9e-08 63.5 90 34.4
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 1.9e-08 63.5 126 31.0
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 2.5e-08 63.2 86 34.9
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 2.5e-08 63.2 90 34.4
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 2.5e-08 63.2 90 34.4
Peaxi162Scf00079g00248 Petunia axillaris HOM05D003340 ORTHO05D003775 2.5e-08 63.2 129 29.5
Psat5g087400 Pisum sativum HOM05D003340 ORTHO05D003775 2.5e-08 63.2 134 26.9
CAN.G264.5 Capsicum annuum HOM05D003340 ORTHO05D003775 4.2e-08 62.4 89 34.8
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 4.2e-08 62.4 130 30.0
Potri.005G070600 Populus trichocarpa HOM05D003340 ORTHO05D003775 5.5e-08 62.0 89 32.6
Lj4P627T24 Lonicera japonica HOM05D003340 ORTHO05D003775 7.2e-08 61.6 96 35.4
SMO119G0032 Selaginella moellendorffii HOM05D003340 ORTHO05D003775 7.2e-08 61.6 87 31.0
EL10Ac4g09660 Beta vulgaris HOM05D003340 ORTHO05D003775 1.2e-07 60.8 84 32.1
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.2e-07 60.8 96 37.5
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.2e-07 60.8 96 37.5
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.2e-07 60.8 86 32.6
SalBow7G3799 Salvia bowleyana HOM05D003340 ORTHO05D003775 1.2e-07 60.8 89 33.7
TWI74G0103 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 1.2e-07 60.8 123 26.8
MBI11_g05791_MAGBIO Magnolia biondii HOM05D003340 ORTHO05D003775 1.6e-07 60.5 128 30.5
VMungo1309G0419 Vigna mungo HOM05D003340 ORTHO05D003775 1.6e-07 60.5 134 27.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 2.1e-07 60.1 182 26.4
CSS0046765 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 2.1e-07 60.1 128 29.7
Medtr3g088030 Medicago truncatula HOM05D003340 ORTHO05D003775 2.1e-07 60.1 136 26.5
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.7e-07 59.7 114 31.6
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.7e-07 59.7 96 35.4
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 2.7e-07 59.7 129 27.1
CSS0003781 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 3.6e-07 59.3 128 29.7
Migut.N00692 Erythranthe guttata HOM05D003340 ORTHO05D003775 4.6e-07 58.9 94 35.1
PGR102G2107 Punica granatum HOM05D003340 ORTHO05D003775 4.6e-07 58.9 82 34.1
Hund21783 Selenicereus undatus HOM05D003340 ORTHO05D003775 4.6e-07 58.9 89 30.3
PGSC0003DMG400006659 Solanum tuberosum HOM05D003340 ORTHO05D003775 4.6e-07 58.9 85 34.1
Manes.13G057400 Manihot esculenta HOM05D003340 ORTHO05D003775 6.1e-07 58.5 94 34.0
HPP92_018105 Vanilla planifolia HOM05D003340 ORTHO05D003775 6.1e-07 58.5 93 30.1
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 6.1e-07 58.5 87 33.3
Dinv07260 Davidia involucrata HOM05D003340 ORTHO05D003775 7.9e-07 58.2 93 30.1
Gohir.A01G189000 Gossypium hirsutum HOM05D003340 ORTHO05D003775 7.9e-07 58.2 142 28.2
Lalb_Chr10g0101671 Lupinus albus HOM05D003340 ORTHO05D003775 7.9e-07 58.2 123 27.6
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 7.9e-07 58.2 86 32.6
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 7.9e-07 58.2 125 27.2
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 1.0e-06 57.8 96 35.4
FAN15G0091 Fragaria x ananassa HOM05D003340 ORTHO05D003775 1.0e-06 57.8 91 31.9
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 1.0e-06 57.8 90 30.0
Psat6g041160 Pisum sativum HOM05D003340 ORTHO05D003775 1.0e-06 57.8 129 27.9
SGA_v2.0_scaffold120G33021 Striga asiatica HOM05D003340 ORTHO05D003775 1.0e-06 57.8 120 31.7
HPP92_019003 Vanilla planifolia HOM05D003340 ORTHO05D003775 1.0e-06 57.8 91 33.0
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 1.4e-06 57.4 89 30.3
Oeu059436.2 Olea europaea HOM05D003340 ORTHO05D003775 1.4e-06 57.4 90 32.2
Phvul.009G125000 Phaseolus vulgaris HOM05D003340 ORTHO05D003775 1.4e-06 57.4 129 27.1
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 1.4e-06 57.4 96 31.2
FAN20G1789 Fragaria x ananassa HOM05D003340 ORTHO05D003775 1.8e-06 57.0 91 31.9
Gohir.A06G044800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.8e-06 57.0 90 32.2
Migut.C01126 Erythranthe guttata HOM05D003340 ORTHO05D003775 2.3e-06 56.6 90 30.0
Zm00001eb289950 Zea mays HOM05D003340 ORTHO05D003775 2.3e-06 56.6 123 27.6
CANSAT25G3576 Cannabis sativa HOM05D003340 ORTHO05D003775 3.0e-06 56.2 90 34.4
Gohir.D01G180500 Gossypium hirsutum HOM05D003340 ORTHO05D003775 3.0e-06 56.2 142 27.5
Gorai.002G222100 Gossypium raimondii HOM05D003340 ORTHO05D003775 3.0e-06 56.2 142 27.5
TAR636G0511 Trochodendron aralioides HOM05D003340 ORTHO05D003775 3.0e-06 56.2 127 28.3
Gohir.D06G045300 Gossypium hirsutum HOM05D003340 ORTHO05D003775 3.9e-06 55.8 90 32.2
Gorai.010G050300 Gossypium raimondii HOM05D003340 ORTHO05D003775 3.9e-06 55.8 90 32.2
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 5.1e-06 55.5 94 33.0
Medtr1g030060 Medicago truncatula HOM05D003340 ORTHO05D003775 5.1e-06 55.5 126 29.4
Os01g0833400 Oryza sativa ssp. japonica HOM05D003340 ORTHO05D003775 5.1e-06 55.5 93 29.0
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 5.1e-06 55.5 85 32.9
RcHm_v2.0_Chr6g0295821 Rosa chinensis HOM05D003340 ORTHO05D003775 5.1e-06 55.5 102 28.4
TWI32G0782 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 5.1e-06 55.5 107 30.8
MD15G1348300 Malus domestica HOM05D003340 ORTHO05D003775 6.7e-06 55.1 91 29.7
Mapoly0166s0008 Marchantia polymorpha HOM05D003340 ORTHO05D003775 6.7e-06 55.1 91 30.8
Cpa.g.sc64.87 Carica papaya HOM05D003340 ORTHO05D003775 8.8e-06 54.7 96 30.2
Duzib093G0952 Durio zibethinus HOM05D003340 ORTHO05D003775 8.8e-06 54.7 130 28.5
PSO170G4666 Papaver somniferum HOM05D003340 ORTHO05D003775 8.8e-06 54.7 129 26.4


User provided reference genes

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