Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 1.8e-84 315.8 160 100.0
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 3.7e-61 238.4 124 96.0
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 8.3e-61 237.3 124 96.0
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 1.9e-60 236.1 125 94.4
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 1.9e-60 236.1 124 95.2
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.2e-60 235.3 124 95.2
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.2e-60 235.3 124 95.2
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 6.0e-59 231.1 124 94.4
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 1.7e-58 229.6 124 91.9
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 1.7e-58 229.6 124 91.9
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 1.7e-58 229.6 124 91.9
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 1.7e-58 229.6 124 91.9
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 2.3e-58 229.2 124 93.5
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 2.3e-58 229.2 124 93.5
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 6.6e-58 227.6 124 92.7
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 1.1e-57 226.9 124 92.7
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 1.1e-57 226.9 124 92.7
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 1.1e-57 226.9 124 92.7
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 1.1e-57 226.9 124 91.9
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 1.9e-57 226.1 124 91.9
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 2.5e-57 225.7 124 91.1
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 3.3e-57 225.3 125 91.2
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 3.3e-57 225.3 124 91.1
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 5.6e-57 224.6 124 91.9
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 5.6e-57 224.6 124 91.9
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 9.5e-57 223.8 124 90.3
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 8.1e-56 220.7 122 91.0
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 1.4e-55 219.9 124 90.3
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 1.8e-55 219.5 122 91.0
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 1.8e-55 219.5 123 88.6
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 2.3e-55 219.2 124 88.7
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 2.3e-55 219.2 124 88.7
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 3.1e-55 218.8 124 89.5
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.0e-55 218.4 124 87.1
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 6.8e-55 217.6 124 87.9
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 1.2e-54 216.9 124 89.5
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 1.5e-54 216.5 125 85.6
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 2.0e-54 216.1 124 88.7
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 5.8e-54 214.5 122 88.5
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 5.8e-54 214.5 124 88.7
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 9.9e-54 213.8 124 87.9
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 2.2e-53 212.6 124 87.9
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 3.2e-52 208.8 113 92.9
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-50 203.0 124 83.1
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 6.6e-50 201.1 118 87.3
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 8.6e-50 200.7 124 86.3
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 1.2e-48 196.8 122 81.1
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 1.6e-48 196.4 124 83.9
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-47 193.7 124 80.6
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.2e-47 191.4 125 81.6
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.4e-46 188.3 112 83.9
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 7.6e-46 187.6 124 81.5
HanXRQChr05g0135281 Helianthus annuus HOM05D007194 ORTHO05D009182 1.9e-44 183.0 98 92.9
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 2.4e-44 182.6 124 79.0
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 1.1e-39 167.2 94 89.4
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 1.6e-35 153.3 91 85.7
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 4.6e-35 151.8 83 90.4
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 2.5e-33 146.0 80 90.0
unitig_87.g27964 Utricularia gibba HOM05D007194 ORTHO05D009182 6.2e-32 141.4 79 91.1
ClCG10G007880 Citrullus lanatus HOM05D007194 ORTHO05D009182 2.5e-25 119.4 79 81.0
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 9.6e-25 117.5 124 56.5
BraSC48t46286Z Brassica rapa HOM05D007194 ORTHO05D009182 1.3e-24 117.1 68 88.2
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 2.1e-24 116.3 60 93.3
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 4.8e-24 115.2 60 90.0
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 1.8e-23 113.2 60 91.7
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 4.5e-22 108.6 60 88.3
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 7.6e-22 107.8 60 88.3
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 2.5e-20 102.8 58 86.2
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 9.3e-20 100.9 124 50.0
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 7.9e-19 97.8 57 87.7
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 1.8e-18 96.7 50 92.0
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 2.5e-17 92.8 114 45.6
Nitab4.5_0000859g0090 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-16 90.1 59 79.7
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 1.2e-14 84.0 45 86.7
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 2.6e-14 82.8 41 95.1
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 1.1e-12 77.4 41 90.2
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 1.1e-12 77.4 41 90.2
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 2.5e-12 76.3 39 92.3
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 3.2e-12 75.9 41 87.8
SHI49604 Sapria himalayana HOM05D007194 ORTHO05D009182 3.5e-11 72.4 37 94.6
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.1e-10 68.6 51 70.6
BraSC54t46378Z Brassica rapa HOM05D007194 ORTHO05D009182 5.1e-10 68.6 39 87.2
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.1e-10 68.6 39 84.6
Dinv00475 Davidia involucrata HOM05D007194 ORTHO05D009182 1.1e-09 67.4 62 58.1
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 1.9e-09 66.6 39 79.5
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 5.7e-09 65.1 39 84.6
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 7.4e-09 64.7 39 79.5
SHI24634 Sapria himalayana HOM05D007194 ORTHO05D009182 2.6e-06 56.2 55 54.5
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 2.6e-06 56.2 39 74.4


User provided reference genes

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