Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 0.0e+00 1110.5 537 100.0
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.2e-244 849.7 535 76.3
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 7.0e-237 823.9 533 73.4
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 4.5e-236 821.2 492 76.8
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 5.0e-235 817.8 552 71.7
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 2.5e-234 815.5 496 76.8
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 8.0e-233 810.4 496 77.0
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.8e-232 809.3 528 75.0
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 2.3e-232 808.9 524 73.7
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 2.3e-232 808.9 470 79.6
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 4.0e-232 808.1 528 75.0
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 2.0e-231 805.8 487 76.4
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 2.6e-231 805.4 522 72.6
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 4.4e-231 804.7 487 75.8
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 1.4e-229 799.7 528 73.5
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 1.4e-229 799.7 523 72.7
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 1.4e-229 799.7 510 73.5
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 3.5e-228 795.0 537 72.3
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 7.7e-228 793.9 502 75.7
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 3.3e-226 788.5 536 71.8
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 9.5e-226 786.9 503 74.8
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 2.8e-225 785.4 543 70.5
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 3.6e-225 785.0 502 74.7
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 5.2e-224 781.2 485 76.3
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 5.4e-221 771.2 488 75.0
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.0e-220 769.2 537 70.0
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 2.0e-220 769.2 510 72.7
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 3.5e-220 768.5 485 75.1
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 2.9e-219 765.4 441 81.4
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.5e-218 762.3 525 70.5
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 7.3e-218 760.8 545 69.4
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 2.1e-217 759.2 492 71.1
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 8.0e-217 757.3 492 70.9
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 4.0e-216 755.0 507 71.2
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 3.4e-215 751.9 498 71.9
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 2.2e-214 749.2 425 81.2
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 2.9e-214 748.8 496 70.8
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 6.4e-214 747.7 466 73.2
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 4.1e-213 745.0 456 74.8
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 9.2e-213 743.8 517 68.3
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 6.0e-212 741.1 515 68.9
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 6.0e-212 741.1 456 74.8
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.0e-211 740.3 496 71.2
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 1.0e-211 740.3 464 75.2
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 3.0e-211 738.8 488 71.7
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 6.6e-211 737.6 520 67.7
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 8.6e-211 737.3 501 70.7
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 8.6e-211 737.3 509 69.4
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 8.6e-211 737.3 509 69.4
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 1.1e-210 736.9 511 68.7
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.5e-210 736.5 511 68.7
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 7.3e-210 734.2 493 69.8
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.1e-209 732.6 471 72.0
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 6.2e-209 731.1 474 71.3
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 6.2e-209 731.1 443 78.8
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 2.3e-208 729.2 517 67.9
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.6e-207 725.7 489 69.5
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 2.6e-207 725.7 522 65.7
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 9.8e-207 723.8 476 70.8
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 2.4e-205 719.2 522 65.9
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 9.2e-205 717.2 462 71.4
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 2.7e-204 715.7 515 66.4
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 7.8e-204 714.1 521 66.0
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.0e-203 713.8 452 72.6
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 3.9e-203 711.8 531 64.6
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 8.6e-203 710.7 467 70.7
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 3.3e-202 708.8 420 79.0
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.2e-201 706.8 488 66.4
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 3.1e-200 702.2 489 69.9
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 3.1e-200 702.2 458 70.3
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 3.1e-200 702.2 430 77.0
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 3.1e-200 702.2 498 67.3
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 4.0e-200 701.8 497 67.0
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 6.8e-200 701.0 420 78.3
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 1.2e-199 700.3 464 70.5
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.5e-199 699.9 505 67.5
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.5e-199 699.9 491 66.4
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 1.7e-198 696.4 522 65.3
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 2.9e-198 695.7 511 65.8
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.9e-198 695.7 477 67.3
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 1.6e-196 689.9 464 70.5
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.6e-196 688.3 434 72.6
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.7e-195 686.4 505 66.7
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 3.0e-195 685.6 505 66.3
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 8.6e-195 684.1 510 65.1
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 1.6e-193 679.9 425 74.8
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 2.8e-193 679.1 508 64.0
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 6.2e-193 677.9 501 62.9
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.7e-190 669.8 435 71.0
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.1e-189 667.2 425 72.7
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 8.1e-185 651.0 455 65.7
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 6.9e-184 647.9 417 73.6
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 1.5e-183 646.7 419 73.3
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 6.4e-174 614.8 385 73.5
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 4.6e-172 608.6 345 80.9
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 6.5e-150 535.0 495 52.9
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.6e-148 529.3 476 53.6
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.0e-146 523.5 533 52.9
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 1.1e-144 517.7 457 52.7
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 3.8e-142 509.2 346 67.9
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.3e-134 484.2 502 46.2
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 5.5e-133 478.8 425 56.0
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 1.6e-119 434.1 446 52.5
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.3e-113 414.5 347 59.9
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.1e-108 397.1 301 65.1
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 1.4e-104 384.4 469 43.3
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.4e-99 367.9 204 80.4
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 2.5e-93 347.1 485 39.4
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 4.3e-93 346.3 449 40.5
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 2.5e-85 320.5 235 65.5
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 8.9e-83 312.0 192 72.9
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 3.4e-82 310.1 223 70.4
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 1.7e-73 281.2 451 35.9
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.0e-70 271.9 150 82.0
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 1.0e-70 271.9 257 57.2
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.9e-69 267.7 150 80.7
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 9.6e-69 265.4 213 58.2
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 3.7e-52 210.3 175 60.0
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.5e-45 187.6 425 30.6
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 2.5e-24 117.9 122 49.2
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 3.9e-22 110.5 73 65.8
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 9.1e-19 99.4 110 50.9
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 8.8e-14 82.8 89 47.2
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.5e-13 82.0 46 73.9
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 4.4e-13 80.5 147 35.4
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 9.7e-13 79.3 57 70.2
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.7e-12 78.6 269 23.8
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 4.8e-12 77.0 309 23.0
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.4e-11 75.5 278 23.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.8e-11 75.1 293 24.2
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 2.4e-11 74.7 269 23.4
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.1e-11 73.9 278 23.0
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 5.3e-11 73.6 269 23.4
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 5.3e-11 73.6 276 24.3
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 7.0e-11 73.2 269 23.8
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 7.0e-11 73.2 269 22.7
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 9.1e-11 72.8 274 24.1
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 9.1e-11 72.8 270 23.3
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.2e-10 72.4 158 24.1
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 2.0e-10 71.6 269 22.3
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 3.5e-10 70.9 272 23.5
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.5e-10 70.9 290 23.8
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.5e-10 70.9 269 22.7
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 3.5e-10 70.9 268 23.1
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.3e-09 68.9 268 23.9
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.7e-09 68.6 274 22.6
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 2.2e-09 68.2 290 22.8
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 1.1e-08 65.9 274 23.7
RcHm_v2.0_Chr2g0117431 Rosa chinensis HOM05D006367 ORTHO05D007942 8.8e-06 56.2 56 50.0


User provided reference genes

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