Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.3e-88 328.9 175 100.0
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 2.2e-67 259.2 196 75.0
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 5.5e-66 254.6 196 73.5
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 7.2e-66 254.2 196 73.5
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.2e-65 253.4 196 74.0
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 1.6e-65 253.1 196 72.4
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.7e-65 252.3 196 73.0
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 3.6e-65 251.9 196 72.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.4e-64 250.0 196 72.4
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 3.0e-64 248.8 196 71.9
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.0e-64 248.8 196 71.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.0e-64 248.8 196 73.0
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.9e-64 248.4 196 72.4
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.9e-64 248.4 196 71.9
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 5.2e-64 248.1 196 73.0
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 8.8e-64 247.3 196 72.4
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 8.8e-64 247.3 196 71.9
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 2.0e-63 246.1 196 70.4
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.6e-63 245.7 196 69.9
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 3.3e-63 245.4 196 70.4
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.4e-63 245.0 196 70.4
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 7.4e-63 244.2 196 71.4
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 9.7e-63 243.8 196 69.4
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.3e-62 243.4 196 71.4
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.3e-62 243.4 196 71.4
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 4.8e-62 241.5 195 70.8
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 6.3e-62 241.1 196 67.9
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 8.2e-62 240.7 196 69.4
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 8.2e-62 240.7 196 68.9
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 8.2e-62 240.7 196 69.9
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.4e-61 240.0 196 69.4
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.4e-61 240.0 196 69.4
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.8e-61 239.6 196 69.9
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 3.1e-61 238.8 196 69.4
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 3.1e-61 238.8 196 67.3
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 3.1e-61 238.8 196 68.9
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 7.0e-61 237.7 196 68.4
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 7.0e-61 237.7 196 69.4
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 7.0e-61 237.7 196 68.4
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 7.0e-61 237.7 196 69.9
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 9.1e-61 237.3 196 66.8
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.0e-60 236.1 196 69.4
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 2.6e-60 235.7 196 68.4
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 4.5e-60 235.0 196 69.4
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 4.5e-60 235.0 196 68.4
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 5.9e-60 234.6 196 67.9
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 7.7e-60 234.2 196 68.9
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 7.7e-60 234.2 196 68.4
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 7.7e-60 234.2 196 68.4
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.7e-60 234.2 196 68.9
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 7.7e-60 234.2 196 66.3
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.3e-59 233.4 197 67.5
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.7e-59 233.0 196 66.3
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 5.0e-59 231.5 197 66.0
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 6.5e-59 231.1 196 67.9
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.1e-58 230.3 196 66.8
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.1e-58 230.3 196 64.3
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 1.1e-58 230.3 196 67.3
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.5e-58 229.9 196 67.3
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 1.5e-58 229.9 197 66.0
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 2.5e-58 229.2 196 65.8
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.5e-58 229.2 196 65.8
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.2e-58 228.4 196 67.3
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 4.2e-58 228.4 196 66.8
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 4.2e-58 228.4 237 59.9
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 7.2e-58 227.6 197 66.0
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.7e-57 225.7 196 63.3
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 2.7e-57 225.7 197 65.5
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 3.6e-57 225.3 197 65.5
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.6e-57 225.3 181 70.7
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 4.7e-57 224.9 197 64.0
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 6.1e-57 224.6 196 64.3
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 6.1e-57 224.6 196 63.3
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 8.0e-57 224.2 196 65.3
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 8.0e-57 224.2 196 64.8
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.0e-56 223.8 197 65.5
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.4e-56 223.4 196 65.8
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.8e-56 223.0 196 65.3
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.8e-56 223.0 196 65.3
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 2.3e-56 222.6 196 65.8
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 3.0e-56 222.2 196 64.3
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 4.0e-56 221.9 196 65.3
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 8.8e-56 220.7 175 72.6
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 8.8e-56 220.7 196 65.3
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 8.8e-56 220.7 196 62.2
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.5e-55 219.9 196 62.2
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.6e-55 219.2 196 64.3
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 5.7e-55 218.0 196 62.2
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 7.5e-55 217.6 196 63.8
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.5e-55 217.6 196 62.2
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 9.8e-55 217.2 196 64.3
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 9.8e-55 217.2 248 54.4
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 1.3e-54 216.9 196 62.2
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.3e-54 216.9 196 61.7
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 1.3e-54 216.9 196 62.2
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.3e-54 216.9 196 65.3
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.8e-54 215.7 196 62.8
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 3.7e-54 215.3 196 62.8
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.7e-54 215.3 196 61.7
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 4.8e-54 214.9 195 61.5
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 6.3e-54 214.5 196 61.2
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 8.3e-54 214.2 196 63.3
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 1.1e-53 213.8 196 61.2
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.1e-53 213.8 196 61.2
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.4e-53 213.4 196 61.7
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.4e-53 213.4 196 61.7
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 1.4e-53 213.4 196 61.2
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.4e-53 213.4 196 61.7
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.4e-53 213.4 196 61.2
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.8e-53 213.0 196 60.7
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 3.1e-53 212.2 196 61.2
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 3.1e-53 212.2 196 61.2
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 3.1e-53 212.2 196 61.2
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 3.1e-53 212.2 196 61.2
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 5.4e-53 211.5 196 62.2
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 5.4e-53 211.5 196 62.2
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 7.0e-53 211.1 211 58.8
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 9.1e-53 210.7 211 58.8
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 1.2e-52 210.3 196 61.2
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.2e-52 210.3 196 60.2
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 5.9e-52 208.0 196 59.2
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 5.9e-52 208.0 196 60.2
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.2e-51 206.1 175 67.4
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 8.5e-51 204.1 175 66.9
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.5e-50 203.4 188 60.6
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.5e-50 203.4 175 65.1
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 4.2e-50 201.8 196 57.7
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 1.6e-49 199.9 196 57.1
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.7e-49 199.1 245 49.8
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.0e-47 193.0 178 62.4
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 4.7e-41 171.8 112 80.4
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 2.3e-40 169.5 116 77.6
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 2.4e-37 159.5 197 50.8
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.7e-35 153.3 134 64.9
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 5.0e-35 151.8 157 56.7
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 4.7e-33 145.2 175 52.6
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 6.8e-32 141.4 134 60.4
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 4.4e-31 138.7 112 62.5
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 1.0e-27 127.5 196 41.3
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.0e-27 127.5 133 58.6
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.1e-25 119.8 236 39.0
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 8.1e-25 117.9 116 57.8
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 8.3e-22 107.8 167 42.5
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 2.7e-20 102.8 196 35.7
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 6.6e-19 98.2 196 35.7
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 7.3e-18 94.7 94 58.5
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 6.2e-17 91.7 63 77.8
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.4e-13 80.5 190 30.0
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 7.1e-13 78.2 192 31.8
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 2.1e-12 76.6 64 67.2
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 3.5e-12 75.9 90 52.2
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 3.9e-11 72.4 46 80.4
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.6e-11 71.6 135 39.3
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 1.2e-09 67.4 46 71.7
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 3.6e-09 65.9 46 71.7
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.3e-06 57.4 41 75.6
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.7e-06 57.0 40 77.5
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 8.4e-06 54.7 195 27.7


User provided reference genes

Program Settings