Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 8.7e-45 183.3 98 100.0
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 9.1e-26 120.2 93 75.3
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.0e-24 116.7 99 70.7
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 7.2e-23 110.5 99 65.7
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 3.6e-22 108.2 98 65.3
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 1.0e-21 106.7 99 65.7
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 8.8e-21 103.6 94 62.8
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 2.6e-20 102.1 98 59.2
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 5.7e-20 100.9 100 63.0
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 5.7e-20 100.9 99 61.6
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 7.4e-20 100.5 98 62.2
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 9.7e-20 100.1 99 60.6
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.3e-19 99.8 97 60.8
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.3e-19 99.8 94 61.7
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 4.8e-19 97.8 93 61.3
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 4.8e-19 97.8 98 57.1
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 1.8e-18 95.9 93 64.5
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.8e-18 95.9 100 59.0
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.4e-18 95.5 100 59.0
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 3.1e-18 95.1 97 57.7
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.1e-18 94.7 95 58.9
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 4.1e-18 94.7 96 57.3
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 5.3e-18 94.4 99 62.6
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 5.3e-18 94.4 97 59.8
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 7.0e-18 94.0 98 57.1
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.2e-17 93.2 99 58.6
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.2e-17 93.2 98 57.1
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.0e-17 92.4 97 56.7
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 2.6e-17 92.0 93 61.3
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 3.5e-17 91.7 93 62.4
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 3.5e-17 91.7 98 54.1
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 4.5e-17 91.3 97 54.6
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 5.9e-17 90.9 95 56.8
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 5.9e-17 90.9 99 54.5
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 2.2e-16 89.0 99 57.6
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 2.2e-16 89.0 98 54.1
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 3.8e-16 88.2 98 59.2
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 3.8e-16 88.2 94 57.4
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 5.0e-16 87.8 99 53.5
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 5.0e-16 87.8 97 58.8
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.1e-15 86.7 98 52.0
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.1e-15 86.7 98 52.0
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.9e-15 85.9 95 54.7
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 4.2e-15 84.7 99 52.5
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 4.2e-15 84.7 84 63.1
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 5.5e-15 84.3 96 57.3
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 9.4e-15 83.6 96 51.0
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 2.1e-14 82.4 94 53.2
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 2.7e-14 82.0 101 55.4
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 2.7e-14 82.0 96 51.0
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.7e-14 82.0 99 58.6
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.7e-14 82.0 99 58.6
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 3.6e-14 81.6 97 49.5
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.6e-14 81.6 98 58.2
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 3.6e-14 81.6 92 52.2
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 4.7e-14 81.3 97 53.6
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 4.7e-14 81.3 96 53.1
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 4.7e-14 81.3 97 50.5
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 6.1e-14 80.9 104 52.9
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.4e-13 79.7 101 49.5
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.8e-13 79.3 95 49.5
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 2.3e-13 79.0 97 49.5
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 5.2e-13 77.8 105 46.7
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 6.8e-13 77.4 98 49.0
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 1.2e-12 76.6 93 50.5
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.6e-12 75.5 100 50.0
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 2.6e-12 75.5 99 53.5
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 3.4e-12 75.1 99 52.5
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.4e-12 75.1 91 49.5
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 7.5e-12 73.9 100 46.0
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 7.5e-12 73.9 99 51.5
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 9.8e-12 73.6 98 46.9
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.3e-11 73.2 76 60.5
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.7e-11 72.8 98 50.0
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 3.7e-11 71.6 92 47.8
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 3.7e-11 71.6 92 47.8
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 3.7e-11 71.6 90 54.4
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 4.8e-11 71.2 95 46.3
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 4.8e-11 71.2 98 51.0
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 6.3e-11 70.9 93 49.5
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 6.3e-11 70.9 99 48.5
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 6.3e-11 70.9 95 48.4
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 8.3e-11 70.5 55 69.1
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 1.1e-10 70.1 98 50.0
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.1e-10 70.1 91 52.7
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.4e-10 69.7 65 64.6
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.8e-10 69.3 93 46.2
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 2.4e-10 68.9 95 46.3
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 3.1e-10 68.6 97 44.3
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 3.1e-10 68.6 92 48.9
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 5.4e-10 67.8 95 48.4
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.2e-09 66.6 98 49.0
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 2.7e-09 65.5 88 52.3
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 2.7e-09 65.5 88 52.3
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 3.5e-09 65.1 98 48.0
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 3.5e-09 65.1 98 50.0
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 7.7e-09 63.9 58 56.9
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 7.7e-09 63.9 97 47.4
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.0e-08 63.5 90 51.1
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.0e-08 63.5 87 51.7
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 2.2e-08 62.4 95 46.3
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 2.9e-08 62.0 95 45.3
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 6.5e-08 60.8 91 42.9
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 6.5e-08 60.8 51 66.7
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 8.5e-08 60.5 93 47.3
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 8.5e-08 60.5 97 45.4
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.9e-07 59.3 97 41.2
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 2.5e-07 58.9 92 44.6
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 4.2e-07 58.2 91 42.9
Zm00001eb433450 Zea mays HOM05D006766 ORTHO05D008534 5.5e-07 57.8 96 42.7
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 7.2e-07 57.4 96 42.7
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 9.4e-07 57.0 29 89.7
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.2e-06 56.6 95 42.1
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 1.6e-06 56.2 93 43.0
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 2.7e-06 55.5 101 37.6
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 2.7e-06 55.5 71 43.7
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 2.7e-06 55.5 69 46.4
ATR0733G142 Amborella trichopoda HOM05D006766 ORTHO05D008534 3.6e-06 55.1 90 41.1
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 3.6e-06 55.1 95 43.2
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 4.7e-06 54.7 36 66.7
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 4.7e-06 54.7 87 44.8
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 6.1e-06 54.3 79 43.0
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 8.0e-06 53.9 97 37.1
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 8.0e-06 53.9 62 51.6


User provided reference genes

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