Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 0.0e+00 1447.6 724 100.0
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 0.0e+00 1203.3 725 83.0
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 0.0e+00 1178.7 720 81.5
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 0.0e+00 1132.1 720 77.5
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1132.1 725 77.1
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 0.0e+00 1130.5 720 77.4
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1126.3 730 77.0
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1125.5 731 77.0
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1118.2 730 77.1
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1108.6 712 77.1
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1104.4 723 75.9
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1090.9 730 74.7
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1090.9 712 76.0
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1090.5 729 73.3
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1088.6 724 74.7
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1087.8 739 73.5
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1085.9 726 73.3
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1082.4 712 75.3
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1078.2 726 73.3
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 9.9e-312 1073.2 726 72.5
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.4e-311 1070.1 726 72.2
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 2.2e-310 1068.5 725 73.4
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 2.9e-310 1068.1 712 75.1
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 6.4e-310 1067.0 712 73.9
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.1e-309 1063.5 726 71.8
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.2e-308 1062.8 712 74.9
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.6e-308 1062.4 726 71.6
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 3.5e-308 1061.2 771 70.3
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 6.0e-308 1060.4 712 74.7
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.8e-308 1060.1 721 71.8
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 1.1e-304 1049.7 708 73.9
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 1.2e-303 1046.2 719 71.8
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 9.2e-301 1036.6 724 72.0
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 1.2e-300 1036.2 715 71.2
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 3.5e-300 1034.6 720 70.8
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 3.5e-300 1034.6 720 70.8
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 1.3e-299 1032.7 708 71.8
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 8.7e-299 1030.0 722 70.4
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 4.3e-298 1027.7 724 70.0
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 4.3e-298 1027.7 681 74.7
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.4e-296 1021.9 717 70.4
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 2.0e-295 1018.8 715 70.8
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 2.6e-295 1018.5 720 71.0
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 4.4e-295 1017.7 727 69.2
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 1.7e-294 1015.8 723 69.7
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 3.8e-294 1014.6 746 69.6
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 4.9e-294 1014.2 730 70.1
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 3.2e-293 1011.5 713 71.0
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 5.4e-293 1010.7 727 69.7
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 2.1e-292 1008.8 697 71.3
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 3.3e-290 1001.5 715 70.3
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 9.6e-290 1000.0 690 70.7
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 2.1e-289 998.8 721 69.9
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 2.1e-289 998.8 712 70.5
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 1.8e-288 995.7 722 68.6
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 9.0e-288 993.4 766 66.2
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 9.0e-288 993.4 712 68.7
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 7.6e-287 990.3 712 69.7
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 9.9e-287 989.9 732 68.3
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 4.9e-286 987.6 724 69.1
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 8.4e-286 986.9 712 69.5
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 1.9e-285 985.7 609 80.8
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 2.3e-283 978.8 725 67.6
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 1.1e-282 976.5 824 61.4
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 6.2e-281 970.7 717 67.8
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 2.4e-280 968.8 719 69.5
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 6.4e-278 960.7 661 72.2
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 8.7e-275 950.3 715 67.0
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 8.7e-275 950.3 712 67.1
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 5.3e-272 941.0 729 65.4
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 6.9e-272 940.6 695 68.1
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 7.2e-261 904.0 724 65.5
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 1.8e-259 899.4 717 63.3
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.1e-258 896.7 711 66.8
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 3.7e-257 891.7 713 65.4
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.5e-255 886.3 615 69.8
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 8.5e-254 880.6 716 61.5
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 3.2e-253 878.6 711 62.2
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 1.4e-251 873.2 538 77.5
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 1.1e-248 863.6 711 61.5
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 1.1e-248 863.6 711 61.5
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 4.5e-247 858.2 715 60.7
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 8.5e-246 854.0 715 61.0
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 8.5e-246 854.0 711 60.8
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 4.2e-245 851.7 721 60.6
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 1.8e-243 846.3 714 60.6
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 1.3e-238 830.1 600 68.7
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 1.4e-235 820.1 726 58.8
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 3.6e-228 795.4 733 57.8
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 2.9e-222 775.8 723 57.5
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 6.6e-214 748.0 622 60.6
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 2.9e-209 732.6 474 77.8
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 8.3e-209 731.1 612 61.3
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.6e-199 700.3 453 75.7
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 3.3e-197 692.6 469 71.4
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 3.1e-195 686.0 737 50.2
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 2.6e-194 682.9 466 69.7
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 3.3e-189 666.0 473 68.9
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 3.2e-184 649.4 741 48.3
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 8.4e-177 624.8 452 67.9
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 2.1e-172 610.1 452 70.6
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 4.2e-168 595.9 480 61.7
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 7.9e-167 591.7 417 69.8
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 1.2e-162 577.8 688 46.8
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.3e-153 547.7 390 69.5
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 3.7e-148 529.6 681 45.5
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 2.7e-143 513.5 422 63.5
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 4.7e-135 486.1 779 39.7
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 2.0e-133 480.7 740 40.0
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 1.8e-131 474.2 381 65.4
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 2.9e-129 466.8 369 65.6
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.5e-120 437.2 294 74.1
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 2.1e-111 407.5 308 67.5
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 4.0e-110 403.3 327 64.2
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.5e-93 348.2 194 88.1
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 1.3e-73 282.0 201 66.2
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.4e-70 271.9 245 60.0
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.2e-55 219.9 315 42.9
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.9e-51 208.4 159 66.0
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.1e-43 182.6 132 70.5
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 6.9e-38 163.3 152 59.2
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 5.9e-37 160.2 108 75.0
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 5.0e-36 157.1 162 54.9
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 2.5e-35 154.8 97 74.2
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 1.9e-32 145.2 568 26.6
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.8e-31 140.6 267 36.0
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.1e-30 139.4 131 55.0
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 2.6e-29 134.8 150 47.3
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.5e-29 134.0 126 59.5
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 1.4e-27 129.0 826 23.8
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.4e-24 117.5 83 69.9
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.7e-23 114.4 85 68.2
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 6.9e-22 110.2 63 82.5
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 4.5e-21 107.5 74 67.6
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.4e-16 90.9 116 50.9
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.6e-13 82.4 62 67.7
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 1.3e-12 79.3 48 77.1
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 6.5e-12 77.0 57 70.2
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.5e-11 75.9 62 61.3
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.7e-10 71.6 52 67.3
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 2.0e-08 65.5 48 62.5
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.7e-08 63.9 98 37.8


User provided reference genes

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