Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 2.8e-100 368.6 184 100.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.7e-15 86.3 47 91.5
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.1e-13 80.9 47 85.1
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 6.3e-12 75.1 47 70.2
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 2.4e-11 73.2 60 66.7
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.4e-11 73.2 47 76.6
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.4e-11 73.2 47 76.6
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.1e-11 72.8 51 70.6
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 4.1e-11 72.4 47 76.6
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.3e-11 72.0 48 75.0
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 7.0e-11 71.6 47 70.2
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.2e-10 70.9 49 69.4
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 3.5e-10 69.3 48 66.7
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.9e-10 68.6 47 66.0
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 7.7e-10 68.2 47 63.8
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.3e-09 67.4 47 66.0
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.2e-09 66.6 48 62.5
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 2.2e-09 66.6 78 44.9
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 3.8e-09 65.9 47 66.0
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 3.8e-09 65.9 47 61.7
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.0e-09 65.5 47 61.7
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.0e-09 65.5 47 61.7
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 6.5e-09 65.1 47 61.7
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 6.5e-09 65.1 47 63.8
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 6.5e-09 65.1 47 66.0
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 6.5e-09 65.1 47 59.6
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 8.5e-09 64.7 53 56.6
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 8.5e-09 64.7 78 46.2
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.1e-08 64.3 47 61.7
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.1e-08 64.3 59 52.5
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 1.5e-08 63.9 54 53.7
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.9e-08 63.5 47 59.6
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.9e-08 63.5 78 44.9
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.9e-08 63.5 47 63.8
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.5e-08 63.2 47 59.6
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 2.5e-08 63.2 47 59.6
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 2.5e-08 63.2 47 59.6
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.5e-08 63.2 47 61.7
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.5e-08 63.2 49 59.2
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.2e-08 62.8 47 61.7
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 3.2e-08 62.8 47 59.6
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 3.2e-08 62.8 47 59.6
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 4.2e-08 62.4 47 59.6
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 4.2e-08 62.4 47 59.6
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.2e-08 62.4 47 59.6
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 5.5e-08 62.0 48 60.4
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.5e-08 62.0 47 61.7
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 5.5e-08 62.0 49 63.3
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 7.2e-08 61.6 55 56.4
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 7.2e-08 61.6 59 52.5
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 7.2e-08 61.6 95 42.1
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 9.4e-08 61.2 47 61.7
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 9.4e-08 61.2 47 61.7
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 9.4e-08 61.2 47 61.7
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.2e-07 60.8 47 59.6
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.2e-07 60.8 47 57.4
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 1.6e-07 60.5 47 59.6
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.6e-07 60.5 47 59.6
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.1e-07 60.1 47 59.6
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 2.1e-07 60.1 47 59.6
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 2.7e-07 59.7 47 59.6
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.7e-07 59.7 47 59.6
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.7e-07 59.7 47 59.6
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 2.7e-07 59.7 47 59.6
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.7e-07 59.7 47 61.7
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 2.7e-07 59.7 93 38.7
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 3.6e-07 59.3 47 57.4
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 3.6e-07 59.3 47 57.4
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 3.6e-07 59.3 47 57.4
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 3.6e-07 59.3 47 55.3
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 4.7e-07 58.9 45 64.4
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 4.7e-07 58.9 49 61.2
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 6.1e-07 58.5 47 57.4
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.1e-07 58.5 48 56.2
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 8.0e-07 58.2 79 41.8
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 8.0e-07 58.2 48 62.5
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 8.0e-07 58.2 62 46.8
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 8.0e-07 58.2 48 58.3
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.0e-06 57.8 47 57.4
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.0e-06 57.8 49 63.3
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.0e-06 57.8 79 41.8
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.0e-06 57.8 62 46.8
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.0e-06 57.8 62 46.8
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.0e-06 57.8 62 46.8
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.0e-06 57.8 69 50.7
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.0e-06 57.8 80 42.5
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.0e-06 57.8 62 46.8
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.0e-06 57.8 111 34.2
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.4e-06 57.4 48 60.4
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.4e-06 57.4 48 56.2
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.4e-06 57.4 48 56.2
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 1.8e-06 57.0 62 48.4
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 1.8e-06 57.0 48 56.2
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.8e-06 57.0 47 59.6
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 2.3e-06 56.6 47 57.4
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.3e-06 56.6 47 53.2
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 2.3e-06 56.6 49 59.2
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 2.3e-06 56.6 62 45.2
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.3e-06 56.6 62 45.2
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 2.3e-06 56.6 64 48.4
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.0e-06 56.2 48 54.2
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 3.0e-06 56.2 49 57.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 4.0e-06 55.8 49 57.1
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 5.2e-06 55.5 48 54.2
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 6.7e-06 55.1 49 57.1
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 6.7e-06 55.1 49 55.1
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 8.8e-06 54.7 48 56.2
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 8.8e-06 54.7 49 57.1


User provided reference genes

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