Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.1e-127 459.9 222 100.0
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 5.3e-106 387.9 224 86.2
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 1.5e-89 333.2 221 74.2
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.5e-84 316.6 204 75.5
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 9.1e-82 307.4 203 71.9
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 3.5e-81 305.4 207 70.5
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 4.5e-81 305.1 206 71.8
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 5.9e-81 304.7 206 70.4
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.0e-80 303.9 206 71.4
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.6e-78 296.6 205 71.7
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 4.7e-78 295.0 202 70.8
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 1.0e-77 293.9 205 69.8
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 5.2e-77 291.6 214 67.3
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 1.5e-76 290.0 206 69.4
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 2.0e-76 289.7 204 68.1
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 4.4e-76 288.5 204 68.1
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 5.7e-76 288.1 206 68.4
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 9.7e-76 287.3 207 69.6
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 1.7e-75 286.6 201 70.1
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 4.8e-75 285.0 204 68.1
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 2.4e-74 282.7 208 65.9
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 3.1e-74 282.3 205 67.3
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 3.5e-73 278.9 210 67.6
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 5.9e-73 278.1 208 64.4
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.3e-72 276.9 198 67.7
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 1.7e-72 276.6 203 65.0
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 5.0e-72 275.0 208 63.5
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 6.5e-72 274.6 204 65.2
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 6.5e-72 274.6 208 64.4
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 6.5e-72 274.6 205 65.4
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 6.5e-72 274.6 202 66.3
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 1.1e-71 273.9 206 67.5
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 1.9e-71 273.1 194 67.5
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.9e-71 273.1 204 65.7
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 4.2e-71 271.9 208 64.9
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 7.2e-71 271.2 206 65.0
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 7.2e-71 271.2 206 65.5
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 1.6e-70 270.0 208 63.9
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 2.7e-70 269.2 208 64.9
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.7e-70 269.2 206 65.0
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.4e-69 266.9 202 68.3
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 1.8e-69 266.5 206 64.1
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 6.8e-69 264.6 199 62.8
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 1.5e-68 263.5 208 63.5
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 2.6e-68 262.7 208 62.5
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.3e-67 260.4 208 63.0
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.7e-67 260.0 207 62.8
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 8.3e-67 257.7 200 62.5
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 1.1e-66 257.3 210 63.8
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.8e-66 256.5 221 59.7
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 7.0e-66 254.6 205 62.4
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 7.0e-66 254.6 201 62.7
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 7.0e-66 254.6 208 62.0
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 7.0e-66 254.6 208 62.0
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 1.2e-65 253.8 206 64.6
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 1.6e-65 253.4 206 60.7
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.0e-65 253.1 221 59.3
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 4.5e-65 251.9 214 57.9
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 4.5e-65 251.9 215 58.6
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 7.7e-65 251.1 215 58.6
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 1.7e-64 250.0 207 61.8
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 1.7e-64 250.0 207 58.9
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 2.9e-64 249.2 200 58.5
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 3.8e-64 248.8 201 59.7
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 3.8e-64 248.8 201 59.7
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 3.8e-64 248.8 206 62.1
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 5.0e-64 248.4 201 58.7
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 8.5e-64 247.7 202 60.4
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 1.1e-63 247.3 201 58.7
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.5e-63 246.9 199 59.3
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 1.5e-63 246.9 199 58.8
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 1.9e-63 246.5 201 58.2
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 1.9e-63 246.5 215 57.2
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 4.2e-63 245.4 199 58.8
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 4.2e-63 245.4 201 57.7
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 5.5e-63 245.0 216 58.8
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 5.5e-63 245.0 203 61.6
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 3.6e-62 242.3 200 58.5
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 4.7e-62 241.9 199 61.8
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 6.1e-62 241.5 202 60.9
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 6.1e-62 241.5 203 60.1
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 1.0e-61 240.7 200 58.5
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.4e-61 240.4 202 61.4
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 1.8e-61 240.0 204 58.8
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 2.3e-61 239.6 218 56.9
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 6.8e-61 238.0 200 59.0
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 2.6e-60 236.1 188 63.8
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 9.2e-58 227.6 213 55.4
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 9.2e-58 227.6 200 57.0
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 9.2e-58 227.6 206 54.9
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 2.7e-57 226.1 206 54.4
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 2.9e-56 222.6 167 70.7
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 3.8e-56 222.2 191 59.7
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.6e-54 216.9 206 54.9
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 1.8e-53 213.4 212 52.4
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 8.9e-53 211.1 160 63.1
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.6e-52 209.5 179 58.7
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 5.7e-52 208.4 173 59.5
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 2.9e-51 206.1 222 50.0
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 1.1e-47 194.1 158 60.1
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 2.8e-46 189.5 158 59.5
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 1.8e-45 186.8 160 59.4
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 4.4e-44 182.2 177 54.8
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 4.1e-42 175.6 117 70.9
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 4.6e-41 172.2 211 46.0
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 2.3e-40 169.9 212 45.3
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 3.0e-40 169.5 235 43.4
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 1.5e-39 167.2 241 39.0
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.6e-36 156.4 112 68.8
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 7.5e-36 154.8 156 50.6
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 4.9e-35 152.1 117 60.7
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 3.8e-27 125.9 110 54.5
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 6.4e-27 125.2 128 51.6
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 1.2e-22 110.9 123 50.4
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.5e-20 104.0 129 46.5
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 7.6e-20 101.7 71 67.6
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 2.1e-14 83.6 58 72.4
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 8.1e-14 81.6 50 72.0
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 4.5e-12 75.9 177 31.1
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.1e-07 61.2 54 53.7
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 1.9e-07 60.5 76 39.5
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 4.3e-07 59.3 85 41.2
Cfa017515 Carpinus fangiana HOM05D005776 ORTHO05D007333 1.6e-06 57.4 73 38.4
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 2.1e-06 57.0 73 37.0


User provided reference genes

Program Settings