Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 6.5e-207 723.8 357 100.0
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 7.1e-161 570.9 352 79.5
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 7.1e-161 570.9 352 79.5
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 4.5e-155 551.6 345 77.7
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 2.7e-152 542.3 346 74.0
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-148 530.4 350 74.0
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.7e-146 523.1 352 73.3
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.8e-146 521.9 350 72.3
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 1.3e-141 506.9 345 69.6
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 4.8e-141 505.0 351 71.5
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 1.4e-140 503.4 352 70.5
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 1.0e-138 497.3 356 69.4
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.8e-138 495.4 338 71.6
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 7.1e-137 491.1 358 67.9
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 1.6e-136 490.0 348 67.5
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 3.5e-136 488.8 347 69.5
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 7.9e-136 487.6 358 67.6
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 7.9e-136 487.6 358 67.3
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 1.0e-135 487.3 348 67.2
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 5.1e-135 485.0 358 67.3
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 3.3e-134 482.3 358 67.0
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 7.4e-134 481.1 361 67.9
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 7.4e-134 481.1 357 68.1
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 4.8e-133 478.4 351 67.8
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.3e-133 478.0 350 68.9
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 5.3e-132 474.9 344 66.0
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 5.3e-132 474.9 348 68.4
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 6.9e-132 474.6 333 69.1
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 2.0e-131 473.0 346 65.6
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 7.6e-131 471.1 350 66.9
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.3e-130 470.3 357 63.6
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 2.9e-130 469.2 387 63.3
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 5.0e-130 468.4 357 63.6
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 6.5e-130 468.0 355 65.9
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 1.4e-129 466.8 355 66.2
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.4e-129 466.8 359 64.1
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 2.5e-129 466.1 348 66.1
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 5.5e-129 464.9 353 66.9
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 9.3e-129 464.2 332 70.2
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 1.6e-128 463.4 346 67.3
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 2.1e-128 463.0 357 63.0
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 1.3e-127 460.3 358 64.0
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 2.3e-127 459.5 348 66.1
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 1.1e-126 457.2 355 64.8
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 1.9e-126 456.4 361 62.0
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 2.5e-126 456.1 347 66.0
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 3.3e-126 455.7 351 65.0
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 3.3e-126 455.7 351 65.0
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 4.3e-126 455.3 351 64.7
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 7.4e-126 454.5 347 65.7
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 2.2e-125 453.0 348 64.7
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.8e-125 452.6 350 65.1
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 4.8e-125 451.8 350 65.1
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 1.1e-124 450.7 364 61.0
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 9.1e-124 447.6 348 61.8
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 2.0e-123 446.4 351 65.2
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 1.0e-122 444.1 354 65.3
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 2.2e-122 443.0 346 65.3
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 3.2e-121 439.1 346 62.4
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 6.1e-120 434.9 362 61.3
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 2.3e-119 433.0 353 61.2
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 2.3e-119 433.0 362 61.0
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 2.3e-119 433.0 362 61.0
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 5.1e-119 431.8 368 58.2
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 1.1e-118 430.6 354 60.5
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 1.5e-118 430.3 356 61.8
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 7.4e-118 427.9 369 61.0
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 1.7e-114 416.8 361 60.7
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 3.8e-114 415.6 353 60.1
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 1.4e-113 413.7 360 57.5
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 2.5e-113 412.9 364 58.5
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 2.5e-113 412.9 348 58.9
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 3.2e-113 412.5 372 60.5
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 4.2e-113 412.1 349 59.9
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 5.5e-113 411.8 364 57.7
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 7.2e-113 411.4 368 60.1
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 9.4e-113 411.0 364 58.5
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 1.2e-112 410.6 364 58.0
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 1.2e-112 410.6 355 59.7
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 7.9e-112 407.9 362 57.5
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 3.0e-111 406.0 355 58.9
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 3.0e-111 406.0 355 58.3
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.5e-110 403.7 336 62.2
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 3.3e-110 402.5 364 56.3
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 4.8e-109 398.7 363 57.3
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 6.3e-109 398.3 362 55.8
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 1.3e-106 390.6 360 58.9
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 1.2e-102 377.5 359 56.5
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 7.5e-102 374.8 344 56.1
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 2.2e-101 373.2 336 57.1
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 8.2e-101 371.3 335 57.3
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 8.2e-101 371.3 336 57.4
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 4.2e-97 359.0 335 55.2
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 2.3e-95 353.2 235 73.2
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 9.8e-94 347.8 246 69.9
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 5.4e-92 342.0 237 70.5
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 3.2e-89 332.8 353 51.3
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 3.4e-86 322.8 353 49.6
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 1.4e-79 300.8 282 53.2
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 5.4e-76 288.9 230 63.9
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 2.0e-75 287.0 352 42.9
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.9e-73 280.4 207 67.6
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.8e-72 276.6 207 67.1
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.2e-72 275.4 207 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 1.5e-70 270.8 372 38.7
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 1.6e-67 260.8 164 73.8
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 4.7e-64 249.2 216 60.2
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 1.9e-60 237.3 205 59.5
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 1.6e-59 234.2 217 54.8
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 1.3e-58 231.1 303 44.2
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 2.3e-50 203.8 152 70.4
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 1.4e-47 194.5 234 45.7
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 4.0e-47 193.0 381 33.6
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.6e-46 188.7 120 76.7
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.9e-46 188.3 207 51.7
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 5.4e-44 182.6 145 61.4
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 5.6e-33 146.0 166 42.8
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.5e-22 111.3 64 84.4
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.9e-20 104.4 64 78.1
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.8e-16 90.5 64 71.9
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 1.0e-10 72.0 49 65.3
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 2.3e-10 70.9 107 37.4
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 6.7e-10 69.3 157 31.2
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 8.8e-10 68.9 117 38.5
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 8.8e-10 68.9 50 66.0
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 8.8e-10 68.9 50 66.0
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 8.8e-10 68.9 50 66.0
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 3.3e-09 67.0 49 65.3
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 5.7e-09 66.2 56 53.6
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 2.6e-06 57.4 49 55.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 2.6e-06 57.4 49 55.1
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 2.6e-06 57.4 49 55.1
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 2.6e-06 57.4 49 55.1


User provided reference genes

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