Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.6e-95 352.8 190 100.0
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.7e-66 255.8 193 74.1
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 8.6e-65 250.8 190 72.1
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.1e-62 243.8 178 71.9
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 6.8e-62 241.1 178 70.2
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.2e-61 240.4 193 67.9
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 4.4e-61 238.4 193 67.9
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 7.6e-61 237.7 193 66.8
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.9e-61 237.3 173 70.5
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.3e-60 236.9 184 67.9
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.9e-60 235.7 188 68.6
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.9e-60 235.7 171 72.5
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.8e-60 235.3 191 66.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.8e-60 235.3 191 66.0
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 3.8e-60 235.3 172 72.1
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.8e-60 235.3 142 85.2
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.9e-60 235.0 180 68.9
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 4.9e-60 235.0 202 65.3
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 6.4e-60 234.6 189 67.7
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 8.4e-60 234.2 170 70.6
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.4e-59 233.4 190 66.8
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.9e-59 233.0 173 67.1
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.9e-59 233.0 191 67.5
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.9e-59 233.0 180 66.7
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.9e-59 233.0 189 66.7
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.2e-59 232.3 181 66.3
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 4.2e-59 231.9 192 65.6
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 4.2e-59 231.9 192 64.1
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 5.4e-59 231.5 189 66.7
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.1e-59 231.1 169 69.8
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 7.1e-59 231.1 194 64.9
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 9.3e-59 230.7 167 70.7
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.1e-58 229.6 196 60.7
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.5e-58 228.8 185 67.6
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.5e-58 228.8 194 62.9
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 4.6e-58 228.4 165 70.3
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.8e-58 227.6 193 64.8
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 7.8e-58 227.6 173 69.4
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 7.8e-58 227.6 186 65.6
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 7.8e-58 227.6 178 67.4
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.7e-57 226.5 192 64.1
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.3e-57 226.1 195 65.6
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 3.0e-57 225.7 189 64.6
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.9e-57 225.3 173 67.6
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 5.1e-57 224.9 188 66.0
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 5.1e-57 224.9 172 68.0
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.6e-57 224.6 189 64.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 6.6e-57 224.6 168 68.5
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 8.7e-57 224.2 188 63.3
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.7e-57 224.2 192 64.6
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 8.7e-57 224.2 174 65.5
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 8.7e-57 224.2 200 63.5
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.1e-56 223.8 191 63.9
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.9e-56 223.0 183 64.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.9e-56 223.0 184 66.8
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.5e-56 222.6 178 63.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 2.5e-56 222.6 181 65.7
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 3.3e-56 222.2 168 68.5
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 4.3e-56 221.9 195 62.6
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 7.3e-56 221.1 190 62.1
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 7.3e-56 221.1 159 69.8
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 9.6e-56 220.7 170 65.3
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.3e-55 220.3 182 62.6
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.6e-55 219.9 191 61.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.6e-55 218.8 189 61.4
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 6.2e-55 218.0 171 67.8
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 6.2e-55 218.0 171 67.8
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 6.2e-55 218.0 178 64.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 8.1e-55 217.6 189 61.4
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-54 217.2 191 62.8
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-54 217.2 191 62.8
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.1e-54 217.2 200 60.5
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.4e-54 216.9 195 61.5
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.8e-54 216.5 220 59.1
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.1e-54 215.7 161 67.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 3.1e-54 215.7 185 59.5
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 3.1e-54 215.7 194 61.9
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 4.0e-54 215.3 170 64.1
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 5.3e-54 214.9 173 65.3
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 9.0e-54 214.2 204 59.8
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 9.0e-54 214.2 204 59.8
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 9.0e-54 214.2 195 62.1
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.2e-53 213.8 170 65.3
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.5e-53 213.4 197 59.4
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.6e-53 212.6 152 70.4
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 2.6e-53 212.6 179 64.2
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 4.4e-53 211.8 179 65.9
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 5.8e-53 211.5 183 61.2
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 5.8e-53 211.5 183 65.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.8e-53 211.5 172 62.8
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.8e-53 211.5 172 62.8
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 9.9e-53 210.7 192 61.5
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 9.9e-53 210.7 166 63.3
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.3e-52 210.3 169 66.3
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.3e-52 210.3 184 62.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.7e-52 209.9 180 60.0
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.7e-52 209.9 187 58.3
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.7e-52 209.9 170 66.5
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.2e-52 209.5 196 59.2
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.8e-52 208.8 180 60.0
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 4.9e-52 208.4 150 68.7
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 8.4e-52 207.6 167 65.9
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.9e-51 206.5 177 63.3
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.9e-51 206.5 214 57.0
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.4e-51 206.1 171 64.3
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.4e-51 206.1 192 58.9
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 3.2e-51 205.7 192 61.5
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 3.2e-51 205.7 173 63.6
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.4e-51 204.9 171 63.7
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 5.4e-51 204.9 192 58.9
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 9.3e-51 204.1 212 54.7
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.6e-50 203.4 182 61.0
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.6e-50 203.4 192 57.3
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 3.9e-49 198.7 180 57.8
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 5.1e-49 198.4 231 52.8
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.1e-48 197.2 187 55.6
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 8.1e-47 191.0 193 56.5
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.4e-46 189.5 171 59.1
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.0e-45 186.4 189 56.1
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.0e-45 186.4 159 61.0
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 5.8e-45 184.9 181 56.4
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 3.8e-44 182.2 164 60.4
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.6e-42 175.3 165 54.5
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 5.1e-41 171.8 185 54.1
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 6.7e-41 171.4 157 56.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.5e-40 170.2 185 51.9
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 6.2e-39 164.9 151 58.3
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 2.4e-38 162.9 173 52.0
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.2e-36 156.4 218 45.4
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.8e-33 146.7 183 47.0
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.7e-33 144.4 107 70.1
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.6e-31 140.2 178 46.6
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.1e-31 139.8 172 44.2
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.3e-30 135.2 126 55.6
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.6e-29 132.9 103 68.9
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 3.4e-29 132.5 108 64.8
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 7.6e-29 131.3 139 52.5
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.0e-28 131.0 114 60.5
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.7e-28 130.2 89 67.4
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.2e-27 125.9 84 70.2
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.6e-26 122.1 101 64.4
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 8.7e-25 117.9 99 63.6
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.9e-24 116.7 96 66.7
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 3.7e-23 112.5 89 66.3
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.4e-19 100.5 85 67.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.9e-17 92.4 146 39.7
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.7e-15 85.9 82 58.5
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.0e-12 77.8 124 34.7
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 6.5e-12 75.1 72 56.9
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.1e-11 74.3 76 55.3
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 7.2e-11 71.6 62 61.3
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.8e-09 64.7 97 42.3
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.7e-07 60.5 81 45.7
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.7e-07 59.3 49 67.3
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 4.8e-07 58.9 66 54.5
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 3.1e-06 56.2 49 65.3


User provided reference genes

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