Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 1.4e-226 789.3 401 100.0
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 5.3e-157 558.1 423 65.7
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 2.1e-153 546.2 424 64.4
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.7e-150 536.6 428 62.4
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 1.1e-149 533.9 426 63.4
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 3.8e-147 525.4 429 62.0
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 3.8e-147 525.4 424 62.7
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 4.7e-145 518.5 423 61.2
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 2.0e-143 513.1 425 59.5
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 9.8e-143 510.8 426 60.3
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 5.6e-138 495.0 372 65.6
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 8.0e-137 491.1 423 58.9
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.3e-134 483.8 426 60.8
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.0e-131 474.2 420 56.0
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.2e-129 467.2 435 59.5
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 8.0e-129 464.5 424 55.2
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 8.9e-128 461.1 423 55.1
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 9.2e-125 451.1 443 52.4
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 6.0e-124 448.4 389 60.4
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 7.8e-124 448.0 426 55.2
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 2.5e-122 443.0 424 53.1
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 9.5e-122 441.0 428 53.3
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.2e-121 440.7 426 54.5
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.1e-121 439.9 426 54.0
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.8e-121 439.5 427 52.9
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 6.2e-121 438.3 427 51.8
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 8.1e-121 438.0 423 53.9
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.1e-120 437.6 427 53.4
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.8e-120 436.8 423 53.9
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.4e-117 427.2 420 52.1
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 7.1e-117 424.9 429 52.7
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 1.2e-116 424.1 424 52.1
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.6e-116 423.7 424 50.0
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.6e-116 423.7 467 49.5
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.6e-116 423.7 423 53.2
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.5e-116 422.5 424 53.5
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 4.6e-116 422.2 424 49.8
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 6.0e-116 421.8 425 52.5
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.0e-115 421.0 423 53.0
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 2.3e-115 419.9 418 53.6
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.0e-115 419.5 419 49.9
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 3.9e-115 419.1 423 51.5
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 8.6e-115 417.9 427 51.8
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.3e-114 416.0 421 49.2
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 5.6e-114 415.2 426 51.6
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 5.6e-114 415.2 428 51.4
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 5.6e-114 415.2 426 48.4
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 9.5e-114 414.5 428 50.7
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.1e-113 413.3 371 56.3
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 6.2e-113 411.8 418 51.9
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.1e-112 411.0 392 55.9
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.1e-112 411.0 424 51.9
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 3.4e-111 406.0 362 57.7
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 9.9e-111 404.4 438 50.0
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 3.8e-110 402.5 439 50.1
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 9.2e-109 397.9 427 49.4
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.2e-108 397.5 429 48.7
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 3.5e-108 396.0 428 49.1
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.0e-107 394.4 428 50.0
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.3e-107 393.3 428 49.8
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.3e-107 393.3 427 51.5
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.1e-106 391.0 399 52.1
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 4.3e-106 389.0 460 49.6
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 4.3e-106 389.0 423 50.4
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 7.3e-106 388.3 464 50.4
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.2e-105 387.5 375 52.8
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.8e-105 386.3 428 47.4
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 8.1e-105 384.8 391 51.4
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.1e-104 384.4 428 48.6
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.8e-104 383.6 426 50.9
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 2.4e-104 383.3 427 48.0
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.1e-104 382.9 426 50.7
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.2e-104 382.1 419 50.1
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.5e-103 380.6 420 49.0
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 2.0e-103 380.2 429 48.3
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 3.4e-103 379.4 426 48.8
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 2.9e-102 376.3 426 45.8
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.8e-102 375.9 428 48.6
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 4.9e-102 375.6 427 48.9
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.4e-101 374.0 424 46.2
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 3.2e-101 372.9 424 46.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 3.2e-101 372.9 427 48.5
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 4.2e-101 372.5 429 46.6
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 7.1e-101 371.7 431 46.4
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 9.3e-101 371.3 431 47.3
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 9.3e-101 371.3 429 46.4
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 9.3e-101 371.3 428 50.0
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 9.3e-101 371.3 412 50.0
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 1.2e-100 370.9 426 46.2
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 6.6e-99 365.2 419 46.8
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 9.6e-98 361.3 388 50.5
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.6e-97 360.5 426 45.3
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 4.0e-96 355.9 419 47.3
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 5.3e-96 355.5 428 47.0
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.4e-93 347.4 437 47.1
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 7.1e-93 345.1 426 47.7
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 2.1e-92 343.6 330 51.8
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.1e-92 343.6 419 45.8
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 2.7e-92 343.2 418 44.7
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 3.5e-92 342.8 395 46.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 2.4e-88 330.1 415 45.5
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 1.7e-86 323.9 427 43.3
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 4.9e-86 322.4 371 47.7
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 6.4e-86 322.0 409 43.8
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 4.8e-81 305.8 426 42.7
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.1e-80 303.1 426 42.3
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.0e-79 300.4 419 42.2
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 3.4e-79 299.7 403 45.4
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.4e-77 294.3 365 45.2
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.8e-75 287.3 208 67.8
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.1e-74 284.6 373 42.6
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.7e-68 263.5 348 42.8
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 6.3e-65 252.3 333 44.4
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.5e-61 240.4 211 61.6
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 9.1e-56 221.9 424 34.7
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 2.5e-53 213.8 188 55.3
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 9.4e-53 211.8 317 37.2
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 6.3e-49 199.1 393 34.9
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 2.0e-47 194.1 243 46.5
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 3.0e-43 180.3 428 31.3
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 7.5e-42 175.6 404 30.0
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.7e-41 174.5 466 29.4
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 7.0e-40 169.1 166 56.6
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.3e-38 164.9 154 52.6
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 4.7e-36 156.4 467 27.2
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.5e-34 151.4 452 29.9
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 5.7e-34 149.4 402 30.6
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 5.9e-31 139.4 452 26.1
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 7.2e-29 132.5 492 26.0
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 8.0e-28 129.0 447 26.8
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-23 114.0 491 25.7
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.4e-18 97.1 213 31.9
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 4.4e-18 96.7 72 58.3
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.7e-18 96.3 217 30.9
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 4.1e-16 90.1 76 55.3
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.0e-15 87.8 185 35.1
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.0e-14 83.2 304 25.0
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 5.8e-10 69.7 61 54.1
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 8.3e-09 65.9 54 50.0
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-08 65.1 88 43.2
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.1e-08 63.5 74 47.3


User provided reference genes

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