Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 8.6e-89 330.5 190 100.0
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 3.1e-54 215.7 191 74.9
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.5e-45 186.8 196 63.8
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 4.5e-45 185.3 194 58.8
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 7.6e-45 184.5 193 60.6
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.9e-44 182.6 188 64.9
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 2.4e-43 179.5 193 65.3
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 3.2e-43 179.1 140 71.4
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.8e-41 173.3 190 59.5
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.8e-41 173.3 190 56.8
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.3e-40 169.1 190 56.8
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 7.4e-40 167.9 188 61.2
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 9.6e-40 167.5 192 58.3
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.3e-39 167.2 205 60.5
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.6e-39 166.8 193 56.0
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.6e-39 166.8 171 70.2
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.1e-39 166.4 193 58.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 4.8e-39 165.2 193 59.1
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.1e-38 162.5 206 60.2
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.1e-38 162.5 188 61.7
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 3.1e-38 162.5 190 63.2
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 3.1e-38 162.5 203 61.1
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 2.0e-37 159.8 190 61.6
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 7.6e-37 157.9 198 58.6
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.4e-35 153.7 192 56.8
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 3.2e-35 152.5 120 72.5
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 7.1e-35 151.4 139 64.0
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.2e-34 150.6 201 56.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.6e-34 150.2 219 53.9
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.3e-33 147.1 206 56.8
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.8e-33 146.7 140 64.3
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 2.3e-33 146.4 198 59.6
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 3.9e-33 145.6 124 63.7
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 6.7e-33 144.8 204 54.4
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 8.7e-33 144.4 139 64.0
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.1e-32 144.1 138 63.0
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.9e-32 143.3 139 61.9
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 3.3e-32 142.5 190 52.1
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.3e-32 142.5 140 62.1
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 3.3e-32 142.5 140 62.9
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 4.3e-32 142.1 199 53.8
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 5.7e-32 141.7 134 61.9
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.6e-31 140.2 128 60.9
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.6e-31 140.2 139 60.4
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.8e-31 139.4 139 60.4
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.8e-31 139.4 139 60.4
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 8.2e-31 137.9 202 51.5
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.1e-30 137.5 207 54.6
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.8e-30 136.7 131 62.6
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 2.4e-30 136.3 134 60.4
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 2.4e-30 136.3 137 60.6
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.1e-30 135.6 126 64.3
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 4.1e-30 135.6 141 61.0
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 5.3e-30 135.2 195 46.7
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 6.9e-30 134.8 139 57.6
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 9.0e-30 134.4 190 46.3
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 9.0e-30 134.4 131 58.8
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 9.0e-30 134.4 134 60.4
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.2e-29 134.0 132 57.6
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 3.4e-29 132.5 197 54.8
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 4.5e-29 132.1 137 57.7
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 5.9e-29 131.7 131 59.5
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 5.9e-29 131.7 143 58.0
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 5.9e-29 131.7 198 52.5
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 7.6e-29 131.3 192 53.6
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.0e-28 131.0 133 56.4
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.3e-28 130.6 137 59.9
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.3e-28 130.6 136 58.1
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.7e-28 130.2 147 57.8
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 2.2e-28 129.8 137 59.1
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.9e-28 129.4 136 57.4
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 6.5e-28 128.3 190 54.7
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.4e-27 127.1 186 46.8
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.9e-27 126.7 200 52.5
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 2.5e-27 126.3 144 53.5
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 2.5e-27 126.3 142 57.0
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 5.5e-27 125.2 139 57.6
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 7.2e-27 124.8 204 49.5
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 2.1e-26 123.2 140 54.3
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.5e-26 122.5 135 55.6
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.6e-26 122.1 135 54.8
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.6e-26 122.1 208 51.4
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.3e-25 120.6 132 56.8
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.8e-25 120.2 143 54.5
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 2.3e-25 119.8 127 59.1
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.3e-25 119.8 119 57.1
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 5.1e-25 118.6 138 55.1
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 6.7e-25 118.2 141 52.5
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 1.5e-24 117.1 143 53.1
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 2.5e-24 116.3 138 53.6
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 2.5e-24 116.3 114 59.6
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 7.4e-24 114.8 139 51.8
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 7.4e-24 114.8 135 54.1
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 1.3e-23 114.0 191 45.5
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 1.3e-23 114.0 191 45.5
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.6e-23 113.6 132 51.5
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.6e-23 113.6 136 52.9
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.7e-23 112.5 98 64.3
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 3.7e-23 112.5 117 58.1
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 8.2e-23 111.3 139 54.0
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 8.2e-23 111.3 191 45.0
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.1e-22 110.9 136 53.7
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.4e-22 110.5 132 54.5
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.4e-22 110.5 127 53.5
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.8e-22 110.2 139 53.2
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 4.1e-22 109.0 134 50.0
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 5.3e-22 108.6 133 51.1
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 5.3e-22 108.6 211 43.1
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 6.9e-22 108.2 135 51.1
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 9.0e-22 107.8 123 50.4
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 9.0e-22 107.8 123 50.4
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 9.0e-22 107.8 123 50.4
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.5e-21 107.1 137 48.9
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 3.4e-21 105.9 117 54.7
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 5.9e-21 105.1 122 51.6
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 5.9e-21 105.1 190 42.6
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 7.7e-21 104.8 128 49.2
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 7.7e-21 104.8 136 47.1
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.0e-20 104.4 123 52.0
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.3e-20 104.0 123 51.2
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.3e-20 104.0 123 51.2
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 2.9e-20 102.8 121 51.2
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 5.0e-20 102.1 83 68.7
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 6.5e-20 101.7 123 51.2
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 6.5e-20 101.7 123 51.2
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.5e-19 99.8 73 71.2
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 7.2e-19 98.2 130 49.2
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 7.2e-19 98.2 130 49.2
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 7.2e-19 98.2 154 51.9
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.2e-18 97.4 79 67.1
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.2e-18 97.4 132 48.5
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 3.6e-18 95.9 245 43.3
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 3.6e-18 95.9 75 69.3
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 6.1e-18 95.1 127 46.5
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.9e-17 92.4 195 47.2
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 4.8e-15 85.5 123 49.6
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 8.2e-15 84.7 124 44.4
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 8.2e-15 84.7 152 44.7
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.4e-14 84.0 74 58.1
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.4e-13 79.3 64 65.6
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 5.9e-13 78.6 54 74.1
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 1.3e-12 77.4 126 42.9
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.8e-12 75.9 139 51.8
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-10 70.5 68 57.4
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.3e-09 66.6 51 66.7
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.0e-09 66.2 48 70.8
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 6.7e-09 65.1 44 68.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.0e-08 63.5 53 64.2
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 7.4e-08 61.6 77 45.5
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.8e-07 59.7 82 46.3
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 8.2e-07 58.2 50 58.0


User provided reference genes

Program Settings