Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.5e-49 198.4 95 100.0
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 5.5e-36 154.1 83 88.0
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 7.7e-30 133.7 94 72.3
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 1.8e-18 95.9 86 54.7
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 3.0e-18 95.1 102 52.9
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 6.8e-18 94.0 93 50.5
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.2e-17 93.2 88 56.8
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 5.7e-17 90.9 97 50.5
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 1.3e-16 89.7 90 54.4
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.7e-16 89.4 90 55.6
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 2.2e-16 89.0 93 51.6
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 4.8e-16 87.8 96 53.1
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 6.3e-16 87.4 93 51.6
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 1.1e-15 86.7 83 54.2
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 1.4e-15 86.3 94 46.8
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 2.4e-15 85.5 88 52.3
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 3.1e-15 85.1 78 53.8
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 5.4e-15 84.3 80 53.8
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 9.1e-15 83.6 95 49.5
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.2e-14 83.2 83 51.8
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.2e-14 83.2 83 50.6
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 1.6e-14 82.8 84 59.5
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 2.7e-14 82.0 93 48.4
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 4.5e-14 81.3 97 50.5
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 4.5e-14 81.3 88 47.7
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 5.9e-14 80.9 79 55.7
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 5.9e-14 80.9 88 47.7
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.0e-13 80.1 87 46.0
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 1.3e-13 79.7 89 46.1
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 1.3e-13 79.7 90 48.9
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 2.3e-13 79.0 83 55.4
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 2.3e-13 79.0 83 55.4
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 3.8e-13 78.2 89 51.7
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 5.0e-13 77.8 83 48.2
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 5.0e-13 77.8 96 45.8
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 6.5e-13 77.4 73 47.9
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 8.6e-13 77.0 84 50.0
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 1.1e-12 76.6 90 45.6
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 1.1e-12 76.6 90 46.7
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 1.5e-12 76.3 79 54.4
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.9e-12 75.9 87 41.4
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 1.9e-12 75.9 89 43.8
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 2.5e-12 75.5 92 45.7
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 2.5e-12 75.5 76 52.6
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 2.5e-12 75.5 76 52.6
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 2.5e-12 75.5 60 63.3
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 3.2e-12 75.1 100 47.0
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 3.2e-12 75.1 89 43.8
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 4.2e-12 74.7 74 55.4
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 9.5e-12 73.6 91 42.9
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 9.5e-12 73.6 79 46.8
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 9.5e-12 73.6 56 62.5
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 1.2e-11 73.2 90 51.1
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 1.2e-11 73.2 50 68.0
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 1.2e-11 73.2 49 73.5
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 1.6e-11 72.8 82 46.3
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 1.6e-11 72.8 48 70.8
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 1.6e-11 72.8 50 68.0
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 2.1e-11 72.4 75 50.7
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 2.8e-11 72.0 97 42.3
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 2.8e-11 72.0 86 45.3
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 3.6e-11 71.6 62 56.5
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 4.7e-11 71.2 53 66.0
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 4.7e-11 71.2 77 45.5
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 4.7e-11 71.2 90 43.3
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 4.7e-11 71.2 47 66.0
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 6.1e-11 70.9 81 46.9
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 6.1e-11 70.9 56 60.7
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 6.1e-11 70.9 56 60.7
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 6.1e-11 70.9 78 48.7
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 8.0e-11 70.5 48 72.9
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 8.0e-11 70.5 84 46.4
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 1.0e-10 70.1 50 68.0
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 1.0e-10 70.1 48 66.7
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.8e-10 69.3 70 50.0
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 1.8e-10 69.3 56 62.5
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 1.8e-10 69.3 45 71.1
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 1.8e-10 69.3 74 51.4
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 2.3e-10 68.9 56 60.7
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 2.3e-10 68.9 56 60.7
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 2.3e-10 68.9 53 60.4
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 2.3e-10 68.9 56 58.9
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 3.0e-10 68.6 56 58.9
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 3.0e-10 68.6 50 64.0
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 4.0e-10 68.2 56 58.9
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 8.8e-10 67.0 93 44.1
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 1.2e-09 66.6 50 64.0
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 1.2e-09 66.6 51 58.8
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.5e-09 66.2 85 43.5
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 2.0e-09 65.9 98 39.8
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 2.0e-09 65.9 56 57.1
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 2.0e-09 65.9 48 66.7
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 2.6e-09 65.5 80 42.5
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 2.6e-09 65.5 56 58.9
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 2.6e-09 65.5 85 43.5
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 3.4e-09 65.1 56 55.4
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 3.4e-09 65.1 48 62.5
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 3.4e-09 65.1 67 52.2
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 4.4e-09 64.7 51 60.8
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 4.4e-09 64.7 51 60.8
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 5.7e-09 64.3 55 54.5
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 5.7e-09 64.3 51 58.8
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 5.7e-09 64.3 52 59.6
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 5.7e-09 64.3 48 64.6
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 9.8e-09 63.5 54 57.4
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 1.3e-08 63.2 49 63.3
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.7e-08 62.8 54 55.6
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 1.7e-08 62.8 87 40.2
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 1.7e-08 62.8 52 63.5
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 2.2e-08 62.4 48 62.5
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 2.8e-08 62.0 55 56.4
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 4.9e-08 61.2 48 62.5
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 4.9e-08 61.2 96 35.4
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 4.9e-08 61.2 96 35.4
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 6.3e-08 60.8 48 58.3
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 4.1e-07 58.2 48 60.4
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 1.6e-06 56.2 43 62.8


User provided reference genes

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