Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.4e-116 421.0 214 100.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.8e-80 301.6 196 80.1
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 2.6e-73 279.3 199 72.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.6e-70 270.0 199 69.3
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 7.7e-70 267.7 198 70.7
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.0e-66 255.4 194 65.5
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 9.7e-65 250.8 196 68.4
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 2.2e-64 249.6 200 65.5
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 8.2e-64 247.7 193 69.4
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 8.2e-64 247.7 196 67.3
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.4e-63 246.9 196 66.3
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 1.4e-63 246.9 196 68.4
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.1e-63 245.7 195 66.7
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 9.1e-63 244.2 199 67.3
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.5e-62 241.9 199 63.3
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 7.7e-62 241.1 194 66.5
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.3e-61 240.4 198 64.6
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.3e-61 240.4 198 64.6
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.3e-61 240.4 198 64.6
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.7e-61 240.0 198 64.6
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 2.2e-61 239.6 199 63.8
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.5e-61 237.7 190 65.3
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 5.5e-60 235.0 199 65.3
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 7.2e-60 234.6 193 65.3
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 9.4e-60 234.2 193 61.1
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 2.1e-59 233.0 199 60.3
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.7e-59 232.6 185 67.6
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 6.1e-59 231.5 166 70.5
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 2.3e-58 229.6 196 63.3
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 3.0e-58 229.2 197 64.0
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.0e-58 229.2 164 70.7
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 6.8e-58 228.0 199 60.8
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 8.8e-58 227.6 196 64.3
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 3.4e-57 225.7 192 63.5
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 7.5e-57 224.6 158 65.8
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 9.8e-57 224.2 193 61.7
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.2e-56 223.0 196 61.7
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 3.7e-56 222.2 199 59.3
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 4.8e-56 221.9 192 60.4
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 4.8e-56 221.9 193 56.5
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 6.3e-56 221.5 199 61.8
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.8e-55 219.9 196 60.2
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 4.1e-55 218.8 193 63.2
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 5.4e-55 218.4 196 61.2
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.6e-54 216.9 199 60.3
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.0e-54 216.5 199 60.8
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.0e-54 216.5 196 57.7
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 2.7e-54 216.1 193 56.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 2.7e-54 216.1 158 63.3
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 3.5e-54 215.7 200 58.5
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 4.5e-54 215.3 199 60.8
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 4.5e-54 215.3 193 59.6
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 7.7e-54 214.5 204 58.3
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.7e-53 213.4 193 63.7
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 2.2e-53 213.0 155 65.8
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.2e-53 213.0 204 57.8
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 5.0e-53 211.8 197 60.9
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.1e-52 210.7 211 55.5
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.5e-52 210.3 193 53.4
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.9e-52 209.9 155 67.1
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.5e-52 209.5 200 58.0
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 4.2e-52 208.8 200 57.5
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 4.2e-52 208.8 199 58.8
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 4.2e-52 208.8 191 55.0
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 5.5e-52 208.4 195 56.4
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 7.2e-52 208.0 200 57.5
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 7.2e-52 208.0 199 57.3
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 7.2e-52 208.0 152 68.4
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.1e-51 206.5 193 59.1
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 4.7e-51 205.3 205 53.7
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.0e-50 204.1 193 55.4
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.4e-50 203.8 190 57.9
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.3e-50 203.0 200 54.5
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 3.0e-50 202.6 195 55.9
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 4.0e-50 202.2 196 53.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.2e-49 200.7 194 56.2
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 2.0e-49 199.9 193 52.8
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.6e-49 199.5 144 66.7
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 7.5e-49 198.0 205 55.1
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 9.8e-49 197.6 193 53.9
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.8e-48 196.1 195 54.9
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 8.3e-48 194.5 199 53.3
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.4e-47 193.7 207 53.1
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.8e-47 193.4 207 52.2
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 5.4e-47 191.8 207 52.7
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.4e-47 191.8 207 52.7
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.2e-46 190.7 158 58.9
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 2.7e-46 189.5 193 48.7
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 4.5e-46 188.7 144 61.1
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 7.7e-46 188.0 192 51.6
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.3e-45 187.2 171 55.0
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 3.8e-45 185.7 157 56.7
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 5.0e-45 185.3 158 55.1
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 6.6e-45 184.9 157 54.8
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 6.6e-45 184.9 140 65.7
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.1e-44 184.1 193 51.3
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.5e-44 183.7 157 54.8
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.5e-44 183.7 193 51.3
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.9e-44 183.3 158 54.4
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.9e-44 183.3 158 54.4
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 2.5e-44 183.0 151 56.3
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 5.6e-44 181.8 157 54.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 5.6e-44 181.8 218 51.8
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 5.6e-44 181.8 194 52.1
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 9.5e-44 181.0 162 54.3
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.2e-43 180.6 158 56.3
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.2e-43 180.6 157 54.1
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.2e-43 180.6 163 57.1
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 1.6e-43 180.3 157 53.5
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 2.8e-43 179.5 151 55.0
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.8e-42 176.8 163 55.8
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.3e-42 176.4 162 54.3
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.2e-41 174.1 178 52.2
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.8e-41 171.0 143 60.8
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.1e-39 167.5 159 50.9
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.3e-36 155.6 144 56.9
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 7.3e-36 154.8 143 55.2
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.6e-35 153.7 105 71.4
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.6e-35 153.7 120 63.3
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 3.6e-35 152.5 277 40.4
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 6.2e-35 151.8 199 46.2
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.0e-33 146.7 202 45.5
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 2.0e-33 146.7 159 50.3
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 5.8e-33 145.2 175 49.7
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 3.9e-29 132.5 87 72.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.4e-26 124.0 115 55.7
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.2e-25 120.9 97 61.9
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 7.5e-25 118.2 176 42.0
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 3.7e-24 115.9 180 43.3
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.4e-23 113.2 76 77.6
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 4.1e-23 112.5 147 43.5
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 4.1e-23 112.5 148 43.2
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 7.1e-23 111.7 115 49.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 3.5e-22 109.4 201 38.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 6.6e-21 105.1 162 44.4
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 4.7e-19 99.0 192 35.4
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 3.1e-18 96.3 133 45.1
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.7e-11 72.4 51 70.6
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.4e-10 70.9 77 50.6
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.8e-10 70.5 72 51.4
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.0e-10 69.3 77 50.6
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.4e-08 62.0 58 55.2
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 2.4e-07 60.1 39 74.4


User provided reference genes

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