Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0385 Trochodendron aralioides HOM05D001427 ORTHO05D001320 2.0e-183 645.6 321 100.0
TAR376G0107 Trochodendron aralioides HOM05D001427 ORTHO05D001320 2.6e-130 469.2 313 76.0
TAR628G1114 Trochodendron aralioides HOM05D001427 ORTHO05D001320 9.3e-120 434.1 315 71.1
Nn5g31094 Nelumbo nucifera HOM05D001427 ORTHO05D001320 8.5e-105 384.4 301 68.8
MBI01_g32853_MAGBIO Magnolia biondii HOM05D001427 ORTHO05D001320 1.6e-103 380.2 327 63.3
Actinidia17099 Actinidia chinensis HOM05D001427 ORTHO05D001320 1.5e-101 373.6 319 62.4
Cfa014174 Carpinus fangiana HOM05D001427 ORTHO05D001320 9.1e-99 364.4 318 62.9
PSO017G6586 Papaver somniferum HOM05D001427 ORTHO05D001320 4.5e-98 362.1 327 62.7
Dinv05520 Davidia involucrata HOM05D001427 ORTHO05D001320 7.7e-98 361.3 319 61.4
Haze_22898 Corylus avellana HOM05D001427 ORTHO05D001320 1.0e-97 360.9 318 62.6
Aqoxy5G00923 Aquilegia oxysepala HOM05D001427 ORTHO05D001320 3.8e-97 359.0 321 62.9
PSO170G5991 Papaver somniferum HOM05D001427 ORTHO05D001320 1.4e-96 357.1 327 62.4
Actinidia15535 Actinidia chinensis HOM05D001427 ORTHO05D001320 1.2e-95 354.0 319 60.8
CiPaw.07G129600 Carya illinoinensis HOM05D001427 ORTHO05D001320 1.0e-94 350.9 319 60.5
Ciclev10000992m.g Citrus clementina HOM05D001427 ORTHO05D001320 5.1e-94 348.6 321 58.6
Prupe.5G000400 Prunus persica HOM05D001427 ORTHO05D001320 8.2e-92 341.3 320 59.7
Rhsim06G0000300 Rhododendron simsii HOM05D001427 ORTHO05D006885 8.2e-92 341.3 322 60.2
Manes.18G000200 Manihot esculenta HOM05D001427 ORTHO05D001320 6.5e-89 331.6 317 58.7
vmacro21732 Vaccinium macrocarpon HOM05D001427 ORTHO05D001320 6.5e-89 331.6 321 58.9
Potri.002G001100 Populus trichocarpa HOM05D001427 ORTHO05D001320 8.5e-89 331.3 319 58.3
MD00G1147000 Malus domestica HOM05D001427 ORTHO05D001320 1.6e-87 327.0 317 58.0
Sabra02G0000900 Salix brachista HOM05D001427 ORTHO05D006885 2.1e-87 326.6 322 57.5
COL.COLO4_16218 Corchorus olitorius HOM05D001427 ORTHO05D001320 1.8e-86 323.6 317 56.2
Gohir.A01G101200 Gossypium hirsutum HOM05D001427 ORTHO05D001320 1.1e-85 320.9 315 57.5
Gohir.D01G086100 Gossypium hirsutum HOM05D001427 ORTHO05D001320 2.0e-85 320.1 315 57.5
Gorai.002G111500 Gossypium raimondii HOM05D001427 ORTHO05D001320 2.0e-85 320.1 315 57.5
Thecc.08G097000 Theobroma cacao HOM05D001427 ORTHO05D001320 3.3e-85 319.3 317 56.2
Atru.chr13.14 Acer truncatum HOM05D001427 ORTHO05D001320 7.4e-85 318.2 322 55.9
Glyma.17G262500 Glycine max HOM05D001427 ORTHO05D001320 9.7e-85 317.8 314 57.3
Potri.005G260000 Populus trichocarpa HOM05D001427 ORTHO05D001320 9.7e-85 317.8 317 55.8
CsaV3_4G037810 Cucumis sativus L. HOM05D001427 ORTHO05D001320 1.7e-84 317.0 317 57.1
Glyma.14G224200 Glycine max HOM05D001427 ORTHO05D001320 1.7e-84 317.0 314 56.7
MELO3C017075.2 Cucumis melo HOM05D001427 ORTHO05D001320 3.7e-84 315.8 317 56.8
MD16G1282800 Malus domestica HOM05D001427 ORTHO05D001320 4.8e-84 315.5 313 56.5
ClCG11G019210 Citrullus lanatus HOM05D001427 ORTHO05D001320 1.8e-83 313.5 318 56.3
TWI12G1006 Tripterygium wilfordii HOM05D001427 ORTHO05D001320 2.4e-83 313.2 318 54.7
Duzib093G1659 Durio zibethinus HOM05D001427 ORTHO05D001320 7.0e-83 311.6 316 57.3
Phvul.L001611 Phaseolus vulgaris HOM05D001427 ORTHO05D001320 7.0e-83 311.6 314 56.4
Lj5g0008855 Lotus japonicus HOM05D001427 ORTHO05D001320 1.3e-81 307.4 315 54.9
arahy.Tifrunner.gnm1.ann1.MCT3JP Arachis hypogaea HOM05D001427 ORTHO05D001320 2.9e-81 306.2 317 54.6
arahy.Tifrunner.gnm1.ann1.T53XC3 Arachis hypogaea HOM05D001427 ORTHO05D001320 2.9e-81 306.2 317 54.3
Sed0005403 Sechium edule HOM05D001427 ORTHO05D001320 2.9e-81 306.2 323 55.7
VMungo0647G1928 Vigna mungo HOM05D001427 ORTHO05D001320 2.9e-81 306.2 313 55.6
Sabra05G0201500 Salix brachista HOM05D001427 ORTHO05D001320 6.5e-81 305.1 357 50.7
Duzib041G0466 Durio zibethinus HOM05D001427 ORTHO05D001320 1.1e-80 304.3 315 55.6
Oeu046068.1 Olea europaea HOM05D001427 ORTHO05D001320 1.5e-80 303.9 320 54.4
QL02p016478 Quercus lobata HOM05D001427 ORTHO05D001320 5.5e-80 302.0 320 55.6
Medtr1g026560 Medicago truncatula HOM05D001427 ORTHO05D001320 1.2e-79 300.8 313 53.7
Oeu061451.1 Olea europaea HOM05D001427 ORTHO05D001320 3.6e-79 299.3 317 54.3
CSS0043814 Camellia sinensis var. sinensis HOM05D001427 ORTHO05D001320 1.8e-78 297.0 321 54.8
TPR.G26423 Trifolium pratense HOM05D001427 ORTHO05D001320 1.5e-77 293.9 316 52.5
FAN08G3288 Fragaria x ananassa HOM05D001427 ORTHO05D001320 9.7e-77 291.2 319 54.2
SalBow6G1519 Salvia bowleyana HOM05D001427 ORTHO05D001320 8.3e-76 288.1 315 54.0
FvH4_5g26800 Fragaria vesca HOM05D001427 ORTHO05D001320 1.1e-75 287.7 319 53.9
FAN18G3491 Fragaria x ananassa HOM05D001427 ORTHO05D001320 1.1e-75 287.7 319 53.9
FAN13G3231 Fragaria x ananassa HOM05D001427 ORTHO05D001320 2.7e-74 283.1 319 53.0
RcHm_v2.0_Chr7g0217711 Rosa chinensis HOM05D001427 ORTHO05D001320 2.7e-74 283.1 321 53.0
MSTRG.24937 Avicennia marina HOM05D001427 ORTHO05D001320 2.9e-73 279.6 316 53.2
DCAR_023010 Daucus carota HOM05D001427 ORTHO05D001320 7.2e-72 275.0 318 51.3
Eucgr.F03634 Eucalyptus grandis HOM05D001427 ORTHO05D001320 1.8e-70 270.4 320 50.6
FAN04G0129 Fragaria x ananassa HOM05D001427 ORTHO05D001320 3.0e-70 269.6 319 51.7
Nitab4.5_0001309g0130 Nicotiana tabacum HOM05D001427 ORTHO05D001320 3.4e-69 266.2 319 49.8
Oeu036722.1 Olea europaea HOM05D001427 ORTHO05D001320 5.7e-69 265.4 311 50.5
Peaxi162Scf00064g01427 Petunia axillaris HOM05D001427 ORTHO05D001320 3.7e-68 262.7 318 48.7
EL10Ac1g01747 Beta vulgaris HOM05D001427 ORTHO05D001320 1.2e-66 257.7 317 50.2
Nitab4.5_0003423g0050 Nicotiana tabacum HOM05D001427 ORTHO05D001320 1.2e-66 257.7 319 48.9
PGR083G0133 Punica granatum HOM05D001427 ORTHO05D001320 2.0e-66 256.9 328 49.7
SalBow7G2397 Salvia bowleyana HOM05D001427 ORTHO05D001320 2.3e-65 253.4 312 47.4
Eucgr.F01956 Eucalyptus grandis HOM05D001427 ORTHO05D001320 5.0e-65 252.3 321 46.1
Cpa.g.sc36.87 Carica papaya HOM05D001427 ORTHO05D001320 7.2e-64 248.4 354 44.1
ECA233G3930 Erigeron canadensis HOM05D000290 ORTHO05D006513 2.1e-63 246.9 305 49.5
CSS0008953 Camellia sinensis var. sinensis HOM05D001427 ORTHO05D001320 2.3e-62 243.4 317 48.6
Psat6g000760 Pisum sativum HOM05D001427 ORTHO05D001320 4.0e-62 242.7 213 60.1
Ca_13496_v3 Cicer arietinum L. HOM05D001427 ORTHO05D001320 8.9e-62 241.5 234 57.3
Manes.05G113447 Manihot esculenta HOM05D001427 ORTHO05D001320 5.7e-61 238.8 318 45.9
CDE08G0201 Ceratophyllum demersum HOM05D001427 ORTHO05D001320 1.7e-60 237.3 321 48.0
Hund05062 Selenicereus undatus HOM05D001427 ORTHO05D001320 4.9e-60 235.7 317 46.1
CDE06G2771 Ceratophyllum demersum HOM05D001427 ORTHO05D001320 1.1e-59 234.6 321 47.0
CAN.G208.44 Capsicum annuum HOM05D001427 ORTHO05D001320 1.8e-59 233.8 315 47.6
THA.LOC104813212 Tarenaya hassleriana HOM05D001427 ORTHO05D001320 1.8e-59 233.8 322 47.2
ATR0605G096 Amborella trichopoda HOM05D001427 ORTHO05D001320 2.4e-59 233.4 228 56.6
MSTRG.970 Avicennia marina HOM05D001427 ORTHO05D001320 3.2e-59 233.0 313 48.2
HanXRQChr07g0204331 Helianthus annuus HOM05D001427 ORTHO05D001320 3.2e-59 233.0 302 50.0
Aa31LG4G6760 Aethionema arabicum HOM05D001427 ORTHO05D001320 1.0e-57 228.0 319 47.6
AUR62035194 Chenopodium quinoa HOM05D001427 ORTHO05D001320 6.6e-57 225.3 321 46.4
Thhalv10018563m.g Eutrema salsugineum HOM05D001427 ORTHO05D001320 2.8e-55 219.9 317 44.8
Lsat_1_v5_gn_8_25641 Lactuca sativa HOM05D001427 ORTHO05D001320 3.6e-55 219.5 330 42.1
PGSC0003DMG400029308 Solanum tuberosum HOM05D001427 ORTHO05D001320 2.3e-54 216.9 307 45.9
Sp5g31820 Schrenkiella parvula HOM05D001427 ORTHO05D001320 5.2e-54 215.7 315 44.4
HanXRQChr08g0217031 Helianthus annuus HOM05D001427 ORTHO05D001320 6.8e-54 215.3 307 45.3
Sopen12g031680 Solanum pennellii HOM05D001427 ORTHO05D001320 1.2e-53 214.5 313 45.4
Carub.0002s2356 Capsella rubella HOM05D001427 ORTHO05D001320 2.6e-53 213.4 315 44.1
Lj4A814T58 Lonicera japonica HOM05D001427 ORTHO05D001320 2.6e-53 213.4 329 45.9
Solyc12g095780.2 Solanum lycopersicum HOM05D001427 ORTHO05D001320 2.6e-53 213.4 313 45.0
unitig_21.g20597 Utricularia gibba HOM05D001427 ORTHO05D001320 2.6e-53 213.4 314 44.3
Lalb_Chr01g0008241 Lupinus albus HOM05D001427 ORTHO05D001320 7.5e-53 211.8 256 49.6
HPP92_019648 Vanilla planifolia HOM05D001427 ORTHO05D001320 2.2e-52 210.3 334 41.9
AL2G36800 Arabidopsis lyrata HOM05D001427 ORTHO05D001320 3.7e-52 209.5 315 44.1
THA.LOC104812027 Tarenaya hassleriana HOM05D001427 ORTHO05D001320 1.4e-51 207.6 316 44.3
THA.LOC104801649 Tarenaya hassleriana HOM05D001427 ORTHO05D001320 4.1e-51 206.1 321 44.5
AT1G76660 Arabidopsis thaliana HOM05D001427 ORTHO05D001320 5.4e-51 205.7 315 44.4
Lalb_Chr03g0033731 Lupinus albus HOM05D001427 ORTHO05D001320 1.2e-50 204.5 252 48.8
PGR031G2421 Punica granatum HOM05D001427 ORTHO05D001320 1.3e-49 201.1 327 44.0
unitig_744.g24088 Utricularia gibba HOM05D001427 ORTHO05D001320 3.9e-49 199.5 317 42.0
Sc15g0003990 Simmondsia chinensis HOM05D001427 ORTHO05D001320 6.6e-49 198.7 315 41.6
CARHR070220 Cardamine hirsuta HOM05D001427 ORTHO05D001320 2.3e-46 190.3 316 43.0
Sp1g32290 Schrenkiella parvula HOM05D001427 ORTHO05D001320 2.0e-45 187.2 321 40.5
Thhalv10005687m.g Eutrema salsugineum HOM05D001427 ORTHO05D001320 2.6e-45 186.8 318 40.3
Carub.0001s3442 Capsella rubella HOM05D001427 ORTHO05D001320 3.4e-45 186.4 323 42.7
Os01g0103800 Oryza sativa ssp. japonica HOM05D001427 ORTHO05D001320 1.4e-43 181.0 360 39.2
AUR62042531 Chenopodium quinoa HOM05D001427 ORTHO05D001320 6.0e-42 175.6 321 40.2
Aa31LG6G10030 Aethionema arabicum HOM05D001427 ORTHO05D001320 7.8e-42 175.3 300 41.3
BcaB02g07072 Brassica carinata HOM05D001427 ORTHO05D001320 7.8e-42 175.3 314 41.1
Zm00001eb295630 Zea mays HOM05D001427 ORTHO05D001320 8.6e-41 171.8 369 37.4
A07p28400 Brassica napus HOM05D001427 ORTHO05D001320 9.5e-40 168.3 310 40.6
Zm00001eb343570 Zea mays HOM05D001427 ORTHO05D001320 3.6e-39 166.4 366 36.3
BcaC08g47178 Brassica carinata HOM05D001427 ORTHO05D001320 2.3e-38 163.7 313 38.3
CDE04G1810 Ceratophyllum demersum HOM05D001427 ORTHO05D001320 2.3e-38 163.7 310 39.4
C06p31860 Brassica napus HOM05D001427 ORTHO05D001320 4.0e-38 162.9 310 40.0
BolC6t38312H Brassica oleracea HOM05D001427 ORTHO05D001320 4.0e-38 162.9 310 40.0
BcaC08g45514 Brassica carinata HOM05D001427 ORTHO05D001320 5.2e-38 162.5 310 40.0
CDE02G1442 Ceratophyllum demersum HOM05D001427 ORTHO05D001320 1.9e-35 154.1 296 39.9
CANSAT25G1227 Cannabis sativa HOM05D001427 ORTHO05D001320 8.6e-33 145.2 200 48.0
CARHR035270 Cardamine hirsuta HOM05D001427 ORTHO05D001320 4.3e-32 142.9 299 38.5
Migut.C00152 Erythranthe guttata HOM05D001427 ORTHO05D001320 2.1e-31 140.6 310 37.7
BcaC07g37306 Brassica carinata HOM05D001427 ORTHO05D001320 2.8e-31 140.2 292 38.4
C08p07410 Brassica napus HOM05D001427 ORTHO05D001320 2.8e-31 140.2 292 38.4
A08p06430 Brassica napus HOM05D001427 ORTHO05D001320 8.1e-31 138.7 281 38.4
BraA08t32652Z Brassica rapa HOM05D001427 ORTHO05D001320 8.1e-31 138.7 281 38.4
Actinidia37288 Actinidia chinensis HOM05D001427 ORTHO05D001320 2.6e-29 133.7 152 52.6
SGA_v2.0_scaffold188G40295 Striga asiatica HOM05D001427 ORTHO05D001320 3.4e-29 133.3 237 43.0
SEGI_29937 Sequoiadendron giganteum HOM05D001427 ORTHO05D001320 4.4e-29 132.9 293 35.5
Migut.N02944 Erythranthe guttata HOM05D001427 ORTHO05D001320 9.9e-29 131.7 132 58.3
BcaB04g17616 Brassica carinata HOM05D001427 ORTHO05D001320 3.8e-28 129.8 293 35.2
BcaC08g47224 Brassica carinata HOM05D001427 ORTHO05D001320 4.2e-27 126.3 312 32.4
A07p42330 Brassica napus HOM05D001427 ORTHO05D001320 9.3e-27 125.2 311 33.1
C02p32830 Brassica napus HOM05D001427 ORTHO05D001320 1.2e-26 124.8 302 35.8
BolC6t40116H Brassica oleracea HOM05D001427 ORTHO05D001320 1.0e-25 121.7 312 34.0
BcaC03g15694 Brassica carinata HOM05D001427 ORTHO05D001320 1.3e-25 121.3 301 35.2
BolC2t09415H Brassica oleracea HOM05D001427 ORTHO05D001320 1.3e-25 121.3 301 35.2
C06p50900 Brassica napus HOM05D001427 ORTHO05D001320 2.3e-25 120.6 312 34.6
A02p20840 Brassica napus HOM05D001427 ORTHO05D001320 3.9e-25 119.8 302 35.1
BraA02t07115Z Brassica rapa HOM05D001427 ORTHO05D001320 1.9e-24 117.5 228 39.5
BcaB05g25003 Brassica carinata HOM05D001427 ORTHO05D001320 4.8e-23 112.8 269 37.2
Lalb_Chr19g0131811 Lupinus albus HOM05D001427 ORTHO05D001320 8.4e-20 102.1 147 46.3
GSVIVG01013469001 Vitis vinifera HOM05D001427 ORTHO05D001320 2.4e-19 100.5 123 52.0
Cc10_g12820 Coffea canephora HOM05D001427 ORTHO05D001320 3.9e-17 93.2 76 53.9
SEGI_29506 Sequoiadendron giganteum HOM05D001427 ORTHO05D001320 8.7e-17 92.0 156 43.6
GSVIVG01013470001 Vitis vinifera HOM05D001427 ORTHO05D001320 8.4e-12 75.5 41 90.2
BcaC06g36408 Brassica carinata HOM05D001427 ORTHO05D001320 5.6e-08 62.8 75 44.0


User provided reference genes

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