Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.3e-120 436.4 227 100.0
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 7.1e-74 281.2 181 80.7
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.5e-68 263.5 183 74.9
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.5e-66 256.1 179 77.1
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 9.0e-61 237.7 179 70.9
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 7.2e-58 228.0 183 64.5
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.6e-57 226.9 184 67.9
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.6e-57 226.9 184 67.9
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.4e-56 223.8 179 63.1
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 6.7e-56 221.5 172 69.2
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 2.0e-55 219.9 177 67.8
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 7.4e-55 218.0 181 65.2
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 2.4e-53 213.0 182 64.3
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 5.3e-53 211.8 181 65.2
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 6.9e-53 211.5 180 63.3
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 4.5e-52 208.8 171 62.6
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 7.7e-52 208.0 184 60.9
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 2.2e-51 206.5 176 65.9
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-50 204.1 184 60.9
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.9e-50 203.4 185 60.0
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 6.1e-49 198.4 174 60.3
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.4e-48 197.2 186 59.7
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 5.1e-48 195.3 176 64.8
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.1e-47 194.1 176 63.1
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 1.5e-47 193.7 185 60.0
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 3.3e-47 192.6 183 60.7
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 8.2e-46 188.0 185 58.4
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 5.3e-45 185.3 187 56.7
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 5.3e-45 185.3 182 57.1
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 7.0e-45 184.9 179 58.7
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.5e-44 183.7 198 55.6
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.9e-44 181.8 181 58.0
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.2e-43 179.9 178 53.9
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.2e-43 179.9 155 64.5
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 8.5e-43 177.9 180 57.8
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.5e-42 176.4 207 49.3
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 4.2e-42 175.6 183 54.6
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.2e-41 174.1 185 53.5
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.2e-41 174.1 182 57.1
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.6e-41 173.7 183 54.1
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.1e-41 173.3 180 55.6
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 4.0e-40 169.1 180 53.9
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.0e-39 166.8 179 58.1
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.6e-39 166.4 192 52.6
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 2.6e-39 166.4 183 54.1
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 9.7e-39 164.5 188 53.2
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.7e-38 163.7 178 52.8
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.7e-38 163.7 186 55.9
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 2.2e-38 163.3 195 49.2
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 1.1e-37 161.0 184 51.1
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 1.4e-37 160.6 184 56.0
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 3.1e-37 159.5 182 50.5
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.3e-35 154.1 220 49.5
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 6.5e-35 151.8 187 48.7
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 8.5e-35 151.4 195 47.2
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 1.1e-34 151.0 142 61.3
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 1.1e-34 151.0 187 50.8
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 2.5e-34 149.8 185 50.3
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 2.5e-34 149.8 158 55.1
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 4.2e-34 149.1 187 48.7
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 9.4e-34 147.9 186 50.5
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 9.4e-34 147.9 173 52.6
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.2e-33 147.5 177 51.4
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.6e-33 147.1 182 49.5
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.6e-33 147.1 182 49.5
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 6.1e-33 145.2 175 48.6
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.2e-32 142.1 178 48.3
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 6.8e-32 141.7 173 46.8
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 6.8e-32 141.7 186 46.8
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 6.8e-32 141.7 180 47.2
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 8.8e-32 141.4 183 48.6
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.2e-31 141.0 160 52.5
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.2e-31 141.0 153 52.3
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.5e-31 140.6 175 49.7
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.5e-31 140.6 178 47.2
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.6e-31 139.8 222 43.2
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.6e-31 139.8 176 46.0
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.6e-31 139.8 175 49.7
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 5.7e-31 138.7 179 46.9
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 7.5e-31 138.3 151 55.0
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 9.8e-31 137.9 176 48.3
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 9.8e-31 137.9 176 48.3
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 9.8e-31 137.9 178 48.9
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.7e-30 137.1 161 50.3
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.7e-30 137.1 177 44.6
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 2.2e-30 136.7 183 47.5
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 2.8e-30 136.3 176 47.7
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.7e-30 136.0 176 47.7
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 3.7e-30 136.0 182 45.6
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 8.3e-30 134.8 176 47.2
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 2.4e-29 133.3 183 46.4
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 7.0e-29 131.7 176 46.6
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 7.0e-29 131.7 176 46.6
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 7.0e-29 131.7 154 49.4
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 9.1e-29 131.3 176 45.5
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 9.1e-29 131.3 176 45.5
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 9.1e-29 131.3 166 48.2
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.6e-28 130.6 175 50.3
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 3.5e-28 129.4 175 49.7
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 5.9e-28 128.6 156 50.0
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 5.9e-28 128.6 174 47.7
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 7.7e-28 128.3 176 44.3
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 7.7e-28 128.3 176 44.3
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.0e-27 127.9 186 45.7
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 1.0e-27 127.9 176 44.3
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 1.0e-27 127.9 176 44.3
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.0e-27 127.9 176 44.3
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.0e-27 127.9 177 46.9
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.7e-27 127.1 177 46.9
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 2.9e-27 126.3 186 45.2
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.8e-27 125.9 176 46.6
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 3.8e-27 125.9 182 45.6
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 3.2e-26 122.9 180 42.2
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 4.2e-26 122.5 168 51.2
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 4.7e-25 119.0 182 41.2
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.0e-25 118.2 181 44.2
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 4.0e-24 115.9 194 40.7
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.2e-23 114.4 179 43.6
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 4.4e-23 112.5 178 42.7
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 5.7e-23 112.1 181 43.1
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.7e-22 109.4 169 40.8
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 5.4e-21 105.5 171 40.4
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 2.0e-20 103.6 173 42.8
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 5.9e-20 102.1 172 40.1
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 6.6e-19 98.6 173 40.5
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 6.6e-19 98.6 116 49.1
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.1e-18 97.8 173 39.9
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.5e-18 97.4 180 37.8
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.9e-18 97.1 175 39.4
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.5e-18 96.7 184 37.0
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 4.3e-18 95.9 172 39.5
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 5.6e-18 95.5 185 35.7
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 7.2e-18 95.1 173 38.2
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 2.1e-17 93.6 177 37.3
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 6.1e-17 92.0 172 40.1
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 8.0e-17 91.7 175 39.4
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 8.0e-17 91.7 175 39.4
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 1.8e-16 90.5 175 38.9
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 1.8e-16 90.5 175 38.9
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 8.9e-16 88.2 175 38.3
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.2e-15 87.8 186 34.9
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.2e-15 87.8 141 41.8
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 6.4e-14 82.0 184 37.0
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 8.3e-14 81.6 183 32.8
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 4.1e-13 79.3 179 31.8
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 7.8e-12 75.1 157 31.8
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 7.8e-12 75.1 47 76.6
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 5.0e-11 72.4 59 57.6
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 1.5e-10 70.9 183 31.7
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.2e-09 67.8 155 31.6
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 2.8e-09 66.6 178 32.6
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 1.0e-08 64.7 84 40.5
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 1.0e-08 64.7 176 29.0
MBI15_g34420_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 6.8e-08 62.0 66 54.5
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 8.9e-08 61.6 41 68.3
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 1.2e-07 61.2 52 53.8
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 4.4e-07 59.3 80 38.8
SEGI_00453 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 5.8e-07 58.9 151 32.5
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 9.8e-07 58.2 159 34.6
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.3e-06 57.8 148 32.4
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.7e-06 57.4 192 30.7
HPP92_015856 Vanilla planifolia HOM05D004507 ORTHO05D004874 1.7e-06 57.4 121 33.9
SHI24757 Sapria himalayana HOM05D004507 ORTHO05D004874 2.9e-06 56.6 65 46.2
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.7e-06 56.2 167 32.9
SEGI_22868 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 6.4e-06 55.5 178 27.0
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 8.3e-06 55.1 182 27.5


User provided reference genes

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