Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.4e-136 488.8 242 100.0
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 5.1e-70 268.5 246 61.4
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 4.0e-67 258.8 249 58.6
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.9e-64 250.0 241 57.3
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.6e-58 229.6 246 53.7
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.9e-57 226.1 246 48.8
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.5e-55 219.2 241 48.5
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 3.0e-54 216.1 248 50.4
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.5e-53 213.8 241 47.7
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 9.7e-53 211.1 240 51.2
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 2.4e-51 206.5 240 49.2
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 4.1e-51 205.7 243 45.3
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 1.7e-49 200.3 240 48.8
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.9e-49 199.5 244 45.1
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 3.8e-49 199.1 230 51.7
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.1e-48 197.6 235 50.2
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 4.2e-48 195.7 236 45.8
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 5.5e-48 195.3 213 53.5
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 7.2e-48 194.9 249 47.8
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.2e-47 194.1 245 50.2
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.2e-47 194.1 244 45.1
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.8e-46 190.3 240 49.6
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 3.0e-46 189.5 239 47.7
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.9e-46 189.1 244 43.4
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 2.5e-45 186.4 239 44.8
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 3.3e-45 186.0 254 48.4
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 2.2e-44 183.3 258 48.1
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 6.3e-44 181.8 239 48.1
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.4e-43 180.6 259 48.3
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.8e-43 180.3 239 49.0
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 4.1e-43 179.1 243 44.0
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.0e-42 176.8 244 43.9
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.7e-41 173.7 234 45.7
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.2e-41 173.3 239 46.9
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 6.5e-41 171.8 248 46.4
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 8.5e-41 171.4 236 44.9
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.1e-40 171.0 239 45.6
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 1.4e-40 170.6 252 43.3
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.4e-40 170.6 239 45.6
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.4e-40 170.6 243 41.6
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.9e-40 170.2 246 45.9
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 4.2e-40 169.1 240 45.4
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.5e-40 168.7 242 46.7
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.7e-39 165.6 239 44.8
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 6.1e-39 165.2 244 41.8
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 1.0e-38 164.5 244 44.7
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.8e-38 163.7 239 44.8
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.8e-38 163.7 245 46.5
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 3.9e-38 162.5 253 43.1
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.1e-37 161.0 243 44.9
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.1e-37 161.0 246 43.1
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 2.0e-37 160.2 254 46.5
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 2.0e-37 160.2 253 41.9
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.7e-37 158.7 239 44.8
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 2.2e-36 156.8 248 38.3
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 3.7e-36 156.0 247 41.7
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 8.2e-36 154.8 234 42.7
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 8.2e-36 154.8 238 44.5
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.4e-35 154.1 259 39.0
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 3.1e-35 152.9 236 43.6
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 5.3e-35 152.1 240 42.5
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 9.1e-35 151.4 248 42.3
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.2e-34 151.0 268 38.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.6e-34 150.6 239 40.6
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 7.7e-34 148.3 240 41.7
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 7.7e-34 148.3 245 38.4
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.7e-33 147.1 255 42.4
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 8.5e-33 144.8 266 37.6
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.9e-32 143.7 244 40.6
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.2e-31 141.0 218 43.1
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 2.1e-31 140.2 222 46.4
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 2.1e-31 140.2 237 38.4
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 2.7e-31 139.8 246 39.4
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 3.6e-31 139.4 237 41.8
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 4.7e-31 139.0 239 38.5
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 8.0e-31 138.3 251 37.8
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.0e-30 137.9 264 36.7
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.0e-30 137.9 254 39.4
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 4.0e-30 136.0 249 36.9
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 9.7e-29 131.3 247 38.1
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 9.7e-29 131.3 237 35.0
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 4.8e-28 129.0 229 40.2
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 6.3e-28 128.6 236 34.3
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.4e-27 127.5 243 36.6
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.4e-27 127.5 223 41.7
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 2.4e-27 126.7 244 37.3
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 5.3e-27 125.6 243 35.8
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 9.1e-27 124.8 243 35.8
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.6e-26 124.0 244 38.1
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 5.9e-26 122.1 233 35.6
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 1.7e-25 120.6 257 36.2
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 2.2e-25 120.2 234 39.7
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.9e-24 117.1 243 36.2
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 4.2e-24 115.9 249 36.9
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 5.5e-24 115.5 249 36.1
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.2e-23 114.4 237 35.9
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.7e-23 113.2 233 35.6
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 1.4e-22 110.9 243 37.9
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 2.3e-22 110.2 251 35.5
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 2.3e-22 110.2 256 38.3
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.3e-22 110.2 276 36.2
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 5.2e-22 109.0 177 39.5
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.2e-21 107.8 237 37.1
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.5e-21 107.5 253 34.8
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.0e-21 107.1 280 32.9
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 2.0e-21 107.1 242 33.9
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 2.0e-21 107.1 238 37.4
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 2.6e-21 106.7 280 33.2
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.6e-21 106.7 237 36.7
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 5.7e-21 105.5 251 35.1
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 7.5e-21 105.1 249 35.3
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 9.8e-21 104.8 249 35.3
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 1.3e-20 104.4 251 36.7
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.8e-20 103.2 286 33.6
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 4.8e-20 102.4 248 35.5
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 8.3e-20 101.7 246 35.4
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 8.3e-20 101.7 256 35.2
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 4.1e-19 99.4 239 34.3
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 2.7e-18 96.7 237 35.4
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 3.5e-18 96.3 121 39.7
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 4.5e-18 95.9 118 39.8
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 7.7e-18 95.1 245 33.9
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 1.3e-17 94.4 245 34.7
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.3e-17 94.4 119 39.5
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 2.2e-17 93.6 118 38.1
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 2.2e-17 93.6 270 31.5
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 6.5e-17 92.0 238 34.0
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-16 91.3 121 38.8
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.2e-15 87.8 244 33.2
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-15 87.8 87 49.4
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-15 87.0 101 44.6
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 2.7e-15 86.7 258 31.8
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.6e-15 86.3 242 31.8
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 2.3e-14 83.6 253 30.0
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 2.3e-14 83.6 242 31.8
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 3.0e-14 83.2 262 29.8
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 6.8e-14 82.0 226 33.6
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 3.4e-13 79.7 253 31.2
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 4.9e-12 75.9 84 45.2
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.4e-11 74.3 121 43.8
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 3.1e-11 73.2 86 43.0
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 4.1e-11 72.8 251 27.9
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 4.1e-11 72.8 251 27.9
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 4.1e-11 72.8 251 27.9
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 5.0e-09 65.9 152 37.5
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 8.6e-09 65.1 166 33.7
Peaxi162Scf47975g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 4.3e-08 62.8 101 34.7
Glyma.06G078900 Glycine max HOM05D027503 ORTHO05D005506 1.2e-07 61.2 191 29.3
TAR636G0195 Trochodendron aralioides HOM05D000402 ORTHO05D000263 2.1e-07 60.5 35 85.7
Peaxi162Scf00075g00074 Petunia axillaris HOM05D005081 ORTHO05D005506 4.0e-06 56.2 93 33.3


User provided reference genes

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