Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 6.5e-91 337.4 177 100.0
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 6.1e-81 304.3 177 91.0
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.3e-80 302.4 177 90.4
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 3.7e-78 295.0 177 87.6
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 1.1e-77 293.5 177 87.6
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 1.8e-77 292.7 177 87.0
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.5e-76 288.5 177 86.4
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.5e-76 288.5 177 86.4
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.5e-76 288.5 177 86.4
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 1.0e-75 287.0 177 84.2
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 2.9e-75 285.4 177 83.6
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 8.6e-75 283.9 177 84.7
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 8.6e-75 283.9 177 84.7
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 8.6e-75 283.9 177 84.7
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 8.6e-75 283.9 177 85.3
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 84.7
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 84.7
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 84.7
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 84.7
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 84.7
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 84.7
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 84.7
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 1.9e-74 282.7 177 84.7
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 1.9e-74 282.7 177 84.7
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 3.3e-74 282.0 177 84.2
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 3.3e-74 282.0 177 84.2
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 6.1e-73 277.7 177 83.1
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 82.5
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.4e-72 276.6 177 83.6
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 3.1e-72 275.4 177 83.1
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 6.8e-72 274.2 177 81.9
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.3e-70 270.0 176 81.8
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 4.9e-70 268.1 176 81.2
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 8.3e-70 267.3 177 81.4
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 5.4e-69 264.6 177 79.1
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 1.6e-68 263.1 177 78.0
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 2.7e-68 262.3 177 80.8
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 1.0e-67 260.4 177 78.0
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 2.3e-67 259.2 177 77.4
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 6.6e-67 257.7 162 84.0
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.9e-66 256.1 176 79.5
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.5e-66 255.8 153 86.3
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 2.8e-65 252.3 177 75.7
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 5.2e-64 248.1 162 81.5
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 5.2e-64 248.1 177 75.1
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 8.1e-57 224.2 152 78.9
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 1.4e-53 213.4 141 78.7
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 6.0e-52 208.0 137 79.6
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.0e-51 205.7 161 73.3
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 3.4e-47 192.2 150 72.7
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.3e-43 179.5 99 91.9
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 1.1e-42 177.2 118 76.3
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 1.3e-41 173.7 124 73.4
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 1.3e-41 173.7 119 78.2
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 4.8e-41 171.8 99 85.9
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 6.9e-40 167.9 99 86.9
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 2.0e-39 166.4 118 72.9
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 1.4e-37 160.2 108 76.9
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-37 158.3 107 76.6
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-37 158.3 107 76.6
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-37 158.3 107 76.6
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 5.4e-37 158.3 107 76.6
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.6e-36 156.8 163 56.4
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 7.9e-36 154.5 99 78.8
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 1.1e-34 150.6 178 58.4
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 2.5e-34 149.4 93 80.6
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 3.6e-33 145.6 94 76.6
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 4.0e-32 142.1 98 76.5
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 6.9e-32 141.4 100 76.0
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 9.0e-32 141.0 99 75.8
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 1.2e-31 140.6 160 56.2
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 1.5e-31 140.2 128 60.2
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 7.6e-31 137.9 74 86.5
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 7.6e-31 137.9 74 86.5
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 2.4e-29 132.9 84 85.7
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 9.3e-29 131.0 110 67.3
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.6e-28 130.2 95 69.5
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 8.7e-27 124.4 84 79.8
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 8.7e-27 124.4 76 85.5
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 6.2e-25 118.2 85 78.8
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 4.0e-24 115.5 67 79.1
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 4.0e-24 115.5 75 73.3
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-23 112.8 77 81.8
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 4.5e-23 112.1 84 72.6
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 2.2e-22 109.8 73 80.8
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.2e-22 109.8 73 80.8
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.2e-22 109.8 73 80.8
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 3.8e-22 109.0 176 44.3
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 9.3e-21 104.4 60 90.0
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 1.8e-19 100.1 83 69.9
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 3.3e-18 95.9 65 78.5
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 3.1e-16 89.4 56 78.6
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 6.5e-14 81.6 51 86.3
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 8.4e-14 81.3 99 43.4
Aa31LG5G21710 Aethionema arabicum HOM05D007371 ORTHO05D009319 1.4e-13 80.5 85 58.8
HanXRQChr11g0323761 Helianthus annuus HOM05D007371 ORTHO05D009319 7.2e-13 78.2 81 63.0
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 3.5e-12 75.9 59 71.2
Lalb_Chr11g0071331 Lupinus albus HOM05D007371 ORTHO05D009319 2.2e-09 66.6 70 57.1
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 2.0e-07 60.1 59 55.9
Hund24330 Selenicereus undatus HOM05D007371 ORTHO05D009319 4.5e-07 58.9 41 68.3
Haze_02268 Corylus avellana HOM05D007371 ORTHO05D009319 1.7e-06 57.0 41 73.2


User provided reference genes

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