Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.1e-89 334.0 271 100.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.8e-77 292.0 267 92.5
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.1e-76 288.9 271 91.1
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 5.7e-70 268.5 266 88.3
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.2e-69 266.5 266 85.3
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 4.5e-67 258.8 269 84.4
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 4.5e-67 258.8 267 85.8
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 4.5e-67 258.8 266 84.6
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.0e-66 257.7 271 82.3
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.0e-66 257.7 266 85.7
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 3.8e-66 255.8 268 83.6
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 3.8e-66 255.8 266 85.7
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 8.5e-66 254.6 265 85.3
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.1e-65 254.2 265 87.2
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.9e-65 253.4 266 85.0
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.5e-65 253.1 266 83.1
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 3.2e-65 252.7 264 84.8
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.2e-65 252.7 264 84.8
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 4.2e-65 252.3 273 81.7
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 7.2e-65 251.5 264 84.5
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 9.4e-65 251.1 264 84.1
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 9.4e-65 251.1 271 83.8
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.2e-64 250.8 266 83.8
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.6e-64 250.4 248 88.7
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.1e-64 250.0 269 84.0
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.1e-64 250.0 269 84.0
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.1e-64 250.0 271 83.4
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.6e-64 249.2 271 84.1
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 4.7e-64 248.8 268 83.6
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 6.1e-64 248.4 271 83.0
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 6.1e-64 248.4 266 82.0
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 8.0e-64 248.1 271 82.7
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 8.0e-64 248.1 271 83.0
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.0e-63 247.7 266 83.5
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.0e-63 247.7 266 83.5
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.3e-63 246.5 270 82.6
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 5.2e-63 245.4 266 83.1
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 6.8e-63 245.0 266 73.3
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 8.8e-63 244.6 271 83.0
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 8.8e-63 244.6 269 83.3
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.2e-62 244.2 271 81.9
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.2e-62 244.2 271 81.9
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.2e-62 244.2 271 82.7
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.2e-62 244.2 271 82.7
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.5e-62 243.8 265 83.8
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.6e-62 243.0 267 84.3
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.6e-62 243.0 267 83.9
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.6e-62 243.0 267 83.9
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 4.4e-62 242.3 265 82.3
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 7.5e-62 241.5 274 77.0
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 7.5e-62 241.5 274 79.6
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.7e-61 240.4 266 82.7
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 3.7e-61 239.2 252 84.9
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.8e-60 236.9 267 81.3
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 2.4e-60 236.5 268 80.2
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 3.1e-60 236.1 271 80.1
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 4.1e-60 235.7 266 83.1
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.2e-59 234.2 261 81.2
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.6e-59 233.8 269 80.7
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.7e-59 233.0 263 82.9
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 3.5e-59 232.6 269 81.0
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 4.5e-59 232.3 253 83.8
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 4.5e-59 232.3 267 80.5
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 7.7e-59 231.5 270 79.6
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.0e-58 231.1 262 80.2
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.3e-58 230.7 267 80.1
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.7e-58 230.3 270 79.3
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.3e-58 229.9 265 81.5
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 5.0e-58 228.8 270 78.9
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 6.6e-58 228.4 267 80.5
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 1.9e-57 226.9 272 78.7
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.5e-57 226.5 273 79.5
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 4.2e-57 225.7 272 78.7
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 5.5e-57 225.3 271 79.3
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 7.2e-57 224.9 267 79.4
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 9.5e-57 224.6 272 78.7
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.2e-56 224.2 252 81.3
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 1.2e-56 224.2 270 80.0
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 1.2e-56 224.2 270 80.0
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 1.2e-56 224.2 270 80.0
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.6e-56 223.8 272 78.3
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.1e-56 223.4 250 83.2
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.8e-56 223.0 270 78.9
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 3.6e-56 222.6 270 79.6
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 3.6e-56 222.6 270 79.6
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 3.6e-56 222.6 269 77.3
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 3.6e-56 222.6 273 79.9
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.4e-55 220.7 269 79.2
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.4e-55 220.7 268 79.5
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.8e-55 220.3 267 80.9
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.8e-55 220.3 268 78.7
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.3e-55 219.9 270 79.3
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 4.0e-55 219.2 270 79.3
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 4.0e-55 219.2 243 84.8
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 5.2e-55 218.8 267 80.5
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 5.2e-55 218.8 267 80.5
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 5.2e-55 218.8 270 77.8
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 6.8e-55 218.4 268 78.4
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 6.8e-55 218.4 274 78.5
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.5e-54 217.2 267 77.9
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 1.5e-54 217.2 272 78.3
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 4.4e-54 215.7 268 78.0
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 4.4e-54 215.7 270 75.9
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 5.7e-54 215.3 263 75.7
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 9.8e-54 214.5 244 84.4
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 9.8e-54 214.5 274 76.3
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.2e-53 213.4 274 53.3
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.8e-53 213.0 254 79.5
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.7e-53 212.6 270 79.3
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 3.7e-53 212.6 264 78.0
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 3.7e-53 212.6 264 72.7
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.9e-53 212.2 258 79.8
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 6.3e-53 211.8 250 80.8
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 3.1e-52 209.5 269 76.6
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 5.4e-52 208.8 264 74.6
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 5.4e-52 208.8 264 74.6
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 7.0e-52 208.4 239 86.2
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 7.0e-52 208.4 271 77.5
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 7.0e-52 208.4 269 77.3
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 9.2e-52 208.0 263 76.0
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.6e-51 207.2 254 78.7
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.6e-51 207.2 274 75.9
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.0e-51 206.8 257 79.0
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.5e-51 206.1 267 77.2
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.5e-51 206.1 230 87.8
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 3.8e-50 202.6 273 71.8
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.1e-49 201.1 273 74.0
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.5e-49 200.7 264 71.6
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.3e-49 199.1 234 86.3
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 6.1e-48 195.3 235 85.1
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 6.1e-48 195.3 268 67.2
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.2e-46 191.0 272 73.5
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.5e-46 190.7 226 85.8
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 3.4e-46 189.5 261 72.0
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.4e-46 189.1 277 42.6
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 4.4e-46 189.1 229 84.7
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 3.7e-45 186.0 252 75.0
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 3.7e-45 186.0 262 71.8
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 5.4e-44 182.2 255 73.7
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 1.6e-40 170.6 269 58.7
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.3e-39 166.8 100 81.0
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 4.0e-39 166.0 213 84.5
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-37 161.0 237 76.4
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 2.3e-34 150.2 208 83.7
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 6.2e-32 142.1 83 81.9
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.2e-30 137.9 272 65.8
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.2e-29 133.7 94 71.3
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 8.3e-29 131.7 252 68.7
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.1e-28 131.3 264 55.7
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.2e-28 129.8 85 74.1
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.2e-28 129.8 207 80.2
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 2.1e-24 117.1 249 60.6
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.4e-23 113.6 85 64.7
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.7e-21 107.5 74 71.6
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.8e-21 106.3 86 66.3
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.6e-14 83.6 53 75.5
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 2.1e-08 63.9 253 55.3
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 8.1e-08 62.0 65 49.2
CiPaw.05G143800 Carya illinoinensis HOM05D000094 ORTHO05D002904 2.4e-07 60.5 93 38.7
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 3.1e-07 60.1 99 35.4
AagrBONN_evm.TU.Sc2ySwM_344.5585 Anthoceros agrestis HOM05D000168 ORTHO05D001351 4.0e-07 59.7 100 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3554 Anthoceros agrestis HOM05D000094 ORTHO05D001056 6.9e-07 58.9 99 38.4
arahy.Tifrunner.gnm1.ann1.92LHRM Arachis hypogaea HOM05D000094 ORTHO05D001056 9.0e-07 58.5 107 33.6
PGSC0003DMG400022632 Solanum tuberosum HOM05D000094 ORTHO05D002904 1.2e-06 58.2 97 39.2
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 1.5e-06 57.8 97 37.1
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 1.5e-06 57.8 106 32.1
MBI19_g33010_MAGBIO Magnolia biondii HOM05D000168 ORTHO05D001118 2.0e-06 57.4 94 39.4
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 3.4e-06 56.6 78 41.0
Medtr2g008390 Medicago truncatula HOM05D000168 ORTHO05D001351 3.4e-06 56.6 96 34.4
Lju41C28T22 Lonicera japonica HOM05D000094 ORTHO05D002904 4.5e-06 56.2 99 33.3
AL1G38260 Arabidopsis lyrata HOM05D000094 ORTHO05D002904 5.8e-06 55.8 101 38.6
AT1G27190 Arabidopsis thaliana HOM05D000094 ORTHO05D002904 5.8e-06 55.8 101 38.6
Thhalv10009684m.g Eutrema salsugineum HOM05D000094 ORTHO05D002904 5.8e-06 55.8 101 38.6
Medtr4g092530 Medicago truncatula HOM05D000094 ORTHO05D001056 5.8e-06 55.8 87 36.8
Aa31LG7G8000 Aethionema arabicum HOM05D000094 ORTHO05D002904 7.6e-06 55.5 101 35.6
Carub.0001s2377 Capsella rubella HOM05D000094 ORTHO05D002904 7.6e-06 55.5 101 38.6
SalBow1G3750 Salvia bowleyana HOM05D000094 ORTHO05D002904 7.6e-06 55.5 96 37.5
VMungo0331G1233 Vigna mungo HOM05D000094 ORTHO05D001056 7.6e-06 55.5 96 34.4
arahy.Tifrunner.gnm1.ann1.VBV8VB Arachis hypogaea HOM05D000094 ORTHO05D001056 9.9e-06 55.1 103 36.9
CARHR024650 Cardamine hirsuta HOM05D000094 ORTHO05D002904 9.9e-06 55.1 96 39.6
FAN02G1773 Fragaria x ananassa HOM05D000094 ORTHO05D001056 9.9e-06 55.1 80 36.2
TPR.G30578 Trifolium pratense HOM05D000168 ORTHO05D001118 9.9e-06 55.1 95 38.9


User provided reference genes

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