Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.8e-251 872.1 424 100.0
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 5.1e-166 588.2 413 69.5
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 3.8e-161 572.0 425 67.5
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.1e-157 560.5 425 62.8
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.9e-152 543.1 421 62.5
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.9e-152 543.1 425 61.9
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.0e-150 537.3 399 66.7
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 5.1e-150 535.0 426 63.1
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.6e-148 530.0 421 61.0
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.7e-148 528.9 421 60.6
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.8e-148 528.5 421 61.3
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 8.2e-148 527.7 424 60.1
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 2.4e-147 526.2 425 61.2
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 3.1e-147 525.8 417 63.1
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.4e-146 522.3 417 59.5
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 4.5e-146 521.9 423 60.5
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 2.2e-145 519.6 419 59.9
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 3.8e-145 518.8 416 62.7
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.5e-145 517.7 423 59.8
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-144 517.3 421 60.3
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.9e-144 516.5 419 58.9
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 4.2e-144 515.4 393 64.9
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 5.5e-144 515.0 421 60.1
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 7.2e-144 514.6 424 60.8
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.2e-143 513.8 417 58.8
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 1.2e-143 513.8 421 60.8
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.1e-143 513.1 417 59.0
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 3.6e-143 512.3 402 62.2
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 7.9e-143 511.1 417 58.8
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 3.9e-142 508.8 421 59.9
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 2.8e-140 502.7 418 58.9
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 4.8e-140 501.9 426 59.9
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 3.4e-138 495.7 426 56.6
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.9e-137 492.7 411 60.1
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 2.9e-137 492.7 423 57.4
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 3.2e-136 489.2 413 57.9
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.1e-135 486.5 413 58.4
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 2.1e-135 486.5 405 60.2
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-134 483.8 422 56.9
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.2e-132 476.5 383 60.8
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 2.2e-132 476.5 416 56.0
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.8e-132 476.1 416 55.5
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 8.2e-132 474.6 416 55.8
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.4e-131 473.8 398 58.3
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 3.4e-130 469.2 415 55.4
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 4.5e-130 468.8 408 56.4
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 1.0e-129 467.6 424 55.7
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.7e-129 466.8 424 55.2
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 5.0e-129 465.3 427 56.0
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 5.0e-129 465.3 416 57.5
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.5e-128 463.0 409 56.7
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 4.7e-127 458.8 413 55.7
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 6.1e-127 458.4 399 56.1
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 4.4e-125 452.2 415 57.1
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.7e-124 450.3 426 56.3
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 3.1e-123 446.0 430 54.4
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.9e-120 436.8 391 56.5
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 5.5e-120 435.3 371 57.7
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.1e-119 433.3 380 56.1
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 1.0e-118 431.0 399 53.6
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 3.0e-118 429.5 421 53.7
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 3.0e-118 429.5 392 53.8
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.2e-117 427.6 395 55.9
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.1e-115 421.0 419 50.1
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.4e-115 420.6 410 51.0
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 3.1e-115 419.5 406 54.9
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.2e-114 417.5 399 51.9
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 3.5e-114 416.0 412 52.7
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 4.5e-114 415.6 417 52.8
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 5.9e-114 415.2 412 52.7
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.9e-112 410.2 423 50.4
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 1.9e-112 410.2 412 51.5
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 4.2e-112 409.1 427 50.1
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 7.2e-112 408.3 400 50.0
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.7e-111 406.4 419 49.4
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.4e-110 404.1 415 51.8
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 1.8e-110 403.7 406 51.7
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 1.2e-109 401.0 413 50.8
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.5e-109 400.6 426 49.8
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 2.0e-109 400.2 412 51.0
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 2.6e-109 399.8 404 49.5
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 5.7e-109 398.7 420 49.0
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 9.8e-109 397.9 395 52.7
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.7e-108 397.1 404 51.2
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 3.7e-108 396.0 390 52.6
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 6.3e-108 395.2 390 51.8
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 8.3e-108 394.8 390 52.1
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.4e-107 394.0 384 51.3
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 1.6e-106 390.6 390 51.5
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 2.7e-106 389.8 382 53.1
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 4.5e-106 389.0 426 50.7
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 7.7e-106 388.3 382 50.5
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.9e-105 386.3 382 51.3
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 9.5e-104 381.3 375 51.5
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.6e-103 380.6 376 50.5
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 5.2e-102 375.6 373 50.9
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.0e-101 373.6 371 50.9
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.7e-98 363.2 365 50.4
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 8.9e-94 348.2 287 59.6
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 5.8e-93 345.5 397 48.1
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 7.0e-91 338.6 301 55.1
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.0e-89 332.4 326 52.5
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 8.6e-89 331.6 288 57.3
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 1.5e-85 320.9 253 60.5
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 6.4e-84 315.5 298 52.7
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 9.5e-80 301.6 412 43.2
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 3.7e-76 289.7 417 40.8
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 6.4e-76 288.9 419 40.1
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-75 287.3 294 51.7
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 3.5e-74 283.1 233 57.5
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 1.1e-72 278.1 206 63.6
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 1.4e-70 271.2 174 73.6
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.2e-69 268.1 274 51.1
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 2.2e-68 263.8 196 62.8
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 6.4e-68 262.3 249 55.0
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-60 238.0 169 65.1
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 5.4e-59 232.6 391 34.0
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.8e-54 217.6 189 57.7
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 9.0e-54 215.3 253 45.5
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 1.2e-53 214.9 178 60.1
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 4.3e-48 196.4 214 50.0
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-44 184.9 137 63.5
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 3.8e-44 183.3 193 49.2
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.1e-43 181.8 170 53.5
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 3.5e-42 176.8 173 52.6
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.8e-39 167.2 323 33.7
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 2.2e-36 157.5 186 46.8
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 2.9e-36 157.1 178 50.0
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.1e-35 152.5 279 35.1
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.7e-32 142.9 111 62.2
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.6e-31 141.4 126 54.8
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-30 137.9 112 60.7
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-25 121.7 132 50.8
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-21 108.6 116 48.3
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-20 104.0 116 46.6
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 3.8e-20 103.6 99 50.5
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-12 79.0 87 47.1
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 1.1e-11 75.5 90 46.7
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 8.0e-10 69.3 86 40.7
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.8e-09 65.9 71 45.1
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 8.8e-09 65.9 72 45.8
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 7.4e-08 62.8 53 54.7


User provided reference genes

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