Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 2.2e-114 415.6 202 100.0
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.4e-97 359.0 198 86.9
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 1.6e-96 356.3 198 86.4
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 7.7e-96 354.0 198 83.8
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 1.0e-95 353.6 198 85.9
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 1.0e-95 353.6 198 85.9
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 1.7e-95 352.8 198 85.4
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 2.2e-95 352.4 198 85.4
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 3.8e-95 351.7 198 86.4
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 1.5e-94 349.7 198 85.4
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 3.2e-94 348.6 198 84.8
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 4.2e-94 348.2 198 84.3
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 4.2e-94 348.2 198 86.4
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 7.2e-94 347.4 198 85.4
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 7.2e-94 347.4 198 85.4
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 9.4e-94 347.1 198 85.9
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 9.4e-94 347.1 198 84.3
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.2e-93 346.7 198 83.8
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 2.1e-93 345.9 199 83.4
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.1e-93 345.9 198 83.3
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.6e-93 345.1 206 82.5
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 3.6e-93 345.1 198 85.9
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.7e-93 344.7 198 84.8
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 8.0e-93 344.0 198 83.8
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 8.0e-93 344.0 198 83.8
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 8.0e-93 344.0 198 83.8
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 1.4e-92 343.2 198 84.3
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 1.4e-92 343.2 198 82.8
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 1.8e-92 342.8 198 84.8
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 1.8e-92 342.8 198 82.3
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 1.8e-92 342.8 198 84.8
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 3.0e-92 342.0 198 84.3
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 4.0e-92 341.7 198 83.8
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 4.0e-92 341.7 198 84.3
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 5.2e-92 341.3 198 84.3
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 5.2e-92 341.3 198 84.3
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 8.8e-92 340.5 198 82.8
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 1.2e-91 340.1 199 83.9
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 1.5e-91 339.7 198 82.8
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.5e-91 339.7 198 82.8
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 1.5e-91 339.7 198 83.8
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 2.0e-91 339.3 198 81.8
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 4.4e-91 338.2 198 84.8
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 4.4e-91 338.2 198 84.8
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 4.4e-91 338.2 198 83.3
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 5.7e-91 337.8 198 82.8
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 7.5e-91 337.4 198 83.8
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 7.5e-91 337.4 198 83.3
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 9.7e-91 337.0 198 82.8
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.3e-90 336.7 198 81.8
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.7e-90 336.3 212 77.8
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 1.7e-90 336.3 199 82.4
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 2.2e-90 335.9 198 81.3
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 2.2e-90 335.9 212 77.8
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 2.8e-90 335.5 198 82.3
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 4.8e-90 334.7 199 82.4
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 6.3e-90 334.3 198 81.8
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 6.3e-90 334.3 198 81.3
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.4e-89 333.2 198 81.8
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.4e-89 333.2 198 81.8
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 3.1e-89 332.0 198 82.3
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 4.1e-89 331.6 198 80.8
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.1e-89 331.6 198 81.3
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 5.3e-89 331.3 198 80.8
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 7.0e-89 330.9 198 80.8
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 7.0e-89 330.9 198 80.8
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 7.0e-89 330.9 198 80.8
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 7.0e-89 330.9 198 80.8
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 7.0e-89 330.9 198 80.8
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 7.0e-89 330.9 198 81.3
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 7.0e-89 330.9 198 81.3
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 7.0e-89 330.9 198 81.3
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 1.6e-88 329.7 198 80.3
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 2.0e-88 329.3 198 80.8
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 3.5e-88 328.6 198 79.8
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 5.9e-88 327.8 201 76.6
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 7.7e-88 327.4 198 80.8
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 7.7e-88 327.4 198 79.8
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 7.7e-88 327.4 198 79.8
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 7.7e-88 327.4 198 78.8
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 1.0e-87 327.0 199 78.4
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.9e-87 325.5 199 77.9
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 2.9e-87 325.5 243 69.1
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 5.0e-87 324.7 199 78.4
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 6.5e-87 324.3 198 79.3
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 6.5e-87 324.3 200 76.5
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.5e-86 323.2 204 78.4
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.9e-86 322.8 198 77.3
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.5e-86 321.2 201 77.6
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 2.1e-85 319.3 194 78.9
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 3.6e-85 318.5 198 77.8
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 1.0e-84 317.0 199 76.9
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 6.8e-84 314.3 198 78.3
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 6.8e-84 314.3 198 78.3
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 6.8e-84 314.3 198 78.3
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.3e-82 310.1 224 72.3
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.7e-82 309.7 195 77.9
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 3.3e-78 295.4 198 76.3
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 3.6e-77 292.0 198 71.7
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 4.4e-75 285.0 195 73.3
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 1.4e-73 280.0 156 84.0
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.2e-73 278.9 164 81.7
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 2.9e-71 272.3 159 83.0
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 8.6e-71 270.8 160 77.5
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 1.9e-70 269.6 200 66.5
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 1.2e-69 266.9 199 66.3
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.5e-67 260.0 208 63.9
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 1.5e-67 260.0 200 64.5
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 2.6e-67 259.2 198 68.2
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 3.4e-67 258.8 198 68.2
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 3.9e-63 245.4 132 87.9
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 1.9e-54 216.5 201 60.7
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.0e-51 206.5 116 79.3
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 4.9e-50 201.8 112 84.8
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 3.2e-49 199.1 156 62.8
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 1.5e-46 190.3 105 86.7
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 2.5e-46 189.5 105 84.8
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 1.2e-45 187.2 200 49.5
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 1.8e-44 183.3 205 47.8
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.9e-42 176.0 105 81.0
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 3.2e-41 172.6 105 79.0
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.2e-40 170.6 220 43.2
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 1.0e-39 167.5 111 69.4
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 5.1e-39 165.2 94 83.0
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 3.4e-35 152.5 94 78.7
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 1.7e-34 150.2 91 71.4
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 3.3e-30 136.0 83 79.5
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 2.8e-29 132.9 83 78.3
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.6e-24 117.1 96 64.6
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 1.3e-23 114.0 67 82.1
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.1e-22 110.9 69 79.7
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.2e-19 100.9 67 76.1
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.5e-17 93.2 63 73.0
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 7.1e-17 91.7 198 35.4
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 8.2e-13 78.2 58 69.0
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 1.1e-09 67.8 40 82.5


User provided reference genes

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