Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 2.0e-106 389.0 186 100.0
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.7e-44 182.2 183 55.2
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.2e-40 167.9 128 68.0
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.0e-34 149.8 148 58.1
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.9e-34 148.3 127 63.0
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.9e-34 148.3 127 63.0
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 5.9e-34 148.3 78 88.5
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 7.7e-34 147.9 127 63.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 7.7e-34 147.9 127 63.0
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 7.7e-34 147.9 127 63.0
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 7.7e-34 147.9 127 63.0
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 7.7e-34 147.9 127 63.0
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 7.7e-34 147.9 127 63.0
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.0e-33 147.5 147 55.8
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.3e-33 147.1 127 63.0
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.3e-33 147.1 127 63.0
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.3e-33 147.1 127 62.2
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.3e-33 147.1 127 63.0
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.3e-33 147.1 127 63.0
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.3e-33 147.1 127 63.0
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.3e-33 147.1 127 62.2
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.7e-33 146.7 184 47.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.7e-33 146.7 127 62.2
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.2e-33 146.4 127 62.2
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 2.2e-33 146.4 127 62.2
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.2e-33 146.4 127 62.2
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 2.2e-33 146.4 127 61.4
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 2.9e-33 146.0 127 62.2
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 2.9e-33 146.0 127 60.6
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 2.9e-33 146.0 127 60.6
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.9e-33 146.0 127 62.2
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 61.4
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 61.4
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 61.4
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 3.8e-33 145.6 127 62.2
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 62.2
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 5.0e-33 145.2 127 61.4
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 61.4
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 62.2
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 6.5e-33 144.8 127 61.4
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 8.5e-33 144.4 127 60.6
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 8.5e-33 144.4 127 61.4
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 8.5e-33 144.4 127 61.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.5e-33 144.4 127 61.4
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 8.5e-33 144.4 127 61.4
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 8.5e-33 144.4 127 61.4
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 8.5e-33 144.4 127 61.4
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.1e-32 144.1 127 61.4
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.5e-32 143.7 127 61.4
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.5e-32 143.7 127 61.4
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.5e-32 143.7 127 61.4
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.5e-32 143.7 127 60.6
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 1.9e-32 143.3 127 60.6
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.5e-32 142.9 127 61.4
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.5e-32 142.9 127 61.4
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 2.5e-32 142.9 127 60.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 3.2e-32 142.5 127 61.4
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 3.2e-32 142.5 127 61.4
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 59.8
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 59.8
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 61.4
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 3.2e-32 142.5 127 59.8
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 4.2e-32 142.1 127 60.6
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 4.2e-32 142.1 127 60.6
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 4.2e-32 142.1 127 60.6
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 4.2e-32 142.1 127 60.6
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 4.2e-32 142.1 127 60.6
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 4.2e-32 142.1 127 60.6
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 4.2e-32 142.1 127 61.4
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 5.5e-32 141.7 127 59.8
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 7.2e-32 141.4 127 60.6
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 7.2e-32 141.4 127 60.6
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 7.2e-32 141.4 127 60.6
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 7.2e-32 141.4 127 60.6
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 7.2e-32 141.4 127 60.6
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 7.2e-32 141.4 127 59.8
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 7.2e-32 141.4 127 60.6
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 7.2e-32 141.4 127 60.6
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 9.4e-32 141.0 127 59.1
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 9.4e-32 141.0 127 59.1
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.6e-31 140.2 127 59.8
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 2.7e-31 139.4 127 59.8
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 2.7e-31 139.4 127 59.8
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 3.6e-31 139.0 127 59.1
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.1e-31 138.3 72 88.9
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 1.8e-30 136.7 70 90.0
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 2.3e-30 136.3 127 56.7
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 4.0e-30 135.6 127 56.7
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.2e-29 134.0 114 62.3
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.5e-29 133.7 127 56.7
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.5e-29 133.7 127 56.7
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.5e-29 133.7 70 87.1
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 5.7e-29 131.7 128 56.2
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 8.3e-28 127.9 118 59.3
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.4e-27 127.1 127 53.5
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.6e-26 123.6 126 55.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.6e-26 123.6 127 52.8
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.3e-25 119.8 114 57.0
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.5e-24 117.1 109 58.7
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.2e-24 115.5 127 52.8
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.2e-24 115.5 151 45.7
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.1e-23 113.2 128 47.7
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 6.1e-23 111.7 127 52.8
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.0e-22 110.9 128 48.4
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 4.4e-21 105.5 122 45.9
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 2.8e-20 102.8 68 66.2
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 3.5e-18 95.9 69 68.1
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.0e-14 84.3 98 49.0
Actinidia08227 Actinidia chinensis HOM05D004278 ORTHO05D021139 1.5e-13 80.5 35 97.1
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-13 80.5 35 97.1
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 1.5e-13 80.5 35 97.1
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 7.5e-13 78.2 35 94.3
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 7.0e-11 71.6 35 88.6
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 9.2e-11 71.2 31 96.8
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 4.3e-08 62.4 109 33.9
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.8e-06 57.0 111 31.5


User provided reference genes

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