Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.0e-60 236.5 114 100.0
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.9e-31 138.7 98 73.5
TAR623G1425 Trochodendron aralioides HOM05D000432 ORTHO05D000320 1.5e-27 126.3 99 68.7
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.4e-25 119.0 69 81.2
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 5.8e-16 87.8 97 55.7
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 5.8e-16 87.8 95 54.7
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 9.9e-16 87.0 92 56.5
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 1.3e-15 86.7 93 52.7
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 2.4e-14 82.4 92 52.2
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 1.2e-13 80.1 99 46.5
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 2.1e-13 79.3 97 50.5
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 1.3e-12 76.6 99 51.5
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 6.7e-12 74.3 97 50.5
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 1.5e-11 73.2 79 55.7
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 1.9e-11 72.8 95 48.4
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 3.3e-11 72.0 97 50.5
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 9.6e-11 70.5 100 46.0
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.6e-10 69.7 102 48.0
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 2.8e-10 68.9 94 53.2
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 3.6e-10 68.6 106 47.2
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 6.2e-10 67.8 100 43.0
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 2.4e-09 65.9 99 46.5
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 4.0e-09 65.1 104 42.3
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 9.0e-09 63.9 99 43.4
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 2.0e-08 62.8 75 49.3
Solyc05g013480.4 Solanum lycopersicum HOM05D006540 ORTHO05D008202 2.0e-08 62.8 106 40.6
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 2.0e-08 62.8 106 40.6
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 3.4e-08 62.0 103 39.8
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 3.4e-08 62.0 99 42.4
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 3.4e-08 62.0 99 42.4
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 3.4e-08 62.0 103 39.8
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 3.4e-08 62.0 93 43.0
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.4e-08 62.0 101 40.6
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 4.5e-08 61.6 87 46.0
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 4.5e-08 61.6 74 48.6
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 5.8e-08 61.2 87 44.8
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 9.9e-08 60.5 104 40.4
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 9.9e-08 60.5 76 44.7
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.3e-07 60.1 96 40.6
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.3e-07 60.1 79 49.4
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 1.3e-07 60.1 105 41.9
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.3e-07 60.1 103 38.8
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 2.2e-07 59.3 102 38.2
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 2.9e-07 58.9 77 45.5
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 3.8e-07 58.5 74 47.3
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 3.8e-07 58.5 74 47.3
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 3.8e-07 58.5 105 41.0
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 4.9e-07 58.2 84 45.2
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 1.1e-06 57.0 100 43.0
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.9e-06 56.2 102 41.2
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 3.2e-06 55.5 106 40.6
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.2e-06 55.5 106 40.6
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.2e-06 55.5 106 40.6
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.2e-06 55.5 106 40.6
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 5.5e-06 54.7 105 37.1
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 7.1e-06 54.3 104 36.5
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 7.1e-06 54.3 75 48.0
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 7.1e-06 54.3 75 48.0
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 7.1e-06 54.3 75 48.0


User provided reference genes

Program Settings