Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.5e-286 988.8 502 100.0
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.1e-207 726.9 497 73.4
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.9e-200 702.2 504 72.4
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 9.2e-199 697.2 506 71.5
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 2.5e-196 689.1 471 73.5
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.7e-195 684.9 501 70.7
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 8.1e-195 684.1 471 74.9
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 1.8e-194 682.9 509 69.0
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 3.1e-194 682.2 498 70.9
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.5e-193 679.9 521 68.3
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.6e-193 677.6 472 73.1
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.9e-192 674.9 503 70.2
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 8.4e-192 674.1 505 70.7
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.4e-191 673.3 470 73.0
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 2.4e-191 672.5 494 71.3
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 3.2e-191 672.2 507 68.6
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.2e-190 670.2 501 69.1
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.2e-190 670.2 476 70.8
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.7e-190 669.1 505 69.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 7.8e-190 667.5 512 69.1
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 6.6e-189 664.5 498 69.1
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 8.7e-189 664.1 498 68.7
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.1e-188 663.7 498 68.5
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.1e-188 663.7 479 72.0
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.1e-188 663.7 504 68.7
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.5e-188 663.3 498 70.7
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.1e-187 659.4 482 68.9
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 4.7e-187 658.3 470 72.1
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 6.2e-187 657.9 471 70.9
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 8.1e-187 657.5 471 71.5
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.1e-186 657.1 514 67.3
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.1e-186 655.6 470 69.1
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 4.0e-186 655.2 511 66.9
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 5.2e-186 654.8 512 67.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 5.2e-186 654.8 475 70.5
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.0e-185 652.9 511 66.3
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.6e-185 652.5 503 67.4
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.6e-185 652.5 503 66.6
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 9.9e-185 650.6 467 69.0
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.3e-184 650.2 499 68.7
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 3.8e-184 648.7 525 64.6
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 4.9e-184 648.3 491 66.6
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 4.9e-184 648.3 488 67.6
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 6.4e-184 647.9 502 67.1
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.1e-183 647.1 469 67.2
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 2.4e-183 646.0 495 68.3
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.2e-183 645.6 503 67.4
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 5.4e-183 644.8 500 64.8
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 7.1e-183 644.4 469 67.4
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.6e-182 643.3 469 69.9
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.7e-182 642.5 471 70.1
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 6.0e-182 641.3 512 64.5
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 7.8e-182 641.0 504 67.5
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.0e-181 640.6 471 69.6
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.3e-181 640.2 479 66.8
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.3e-181 640.2 479 66.8
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.6e-181 637.9 479 66.6
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.1e-180 637.1 480 66.9
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 4.3e-180 635.2 502 65.7
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.3e-180 634.4 479 66.2
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.3e-179 633.6 479 66.2
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 2.1e-179 632.9 497 65.6
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.1e-179 632.9 474 67.5
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 6.2e-179 631.3 499 66.5
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 8.1e-179 630.9 512 63.9
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.0e-178 627.5 474 67.5
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.5e-177 626.7 481 65.7
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.5e-177 626.7 507 65.9
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.1e-175 620.5 503 62.8
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.2e-175 619.0 474 67.7
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 5.4e-175 618.2 476 65.1
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 7.1e-175 617.8 495 64.4
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 2.1e-174 616.3 501 63.5
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 2.1e-174 616.3 469 66.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.8e-173 613.2 502 63.7
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 3.0e-173 612.5 499 63.3
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 6.7e-173 611.3 477 65.2
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 2.5e-172 609.4 496 64.1
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 4.3e-172 608.6 534 60.7
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-171 605.9 423 71.9
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.4e-170 602.8 470 65.7
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.2e-169 600.5 498 62.7
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.2e-169 600.5 498 62.7
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.0e-169 599.7 472 64.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.0e-169 599.7 472 64.8
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.7e-168 596.7 477 65.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.1e-166 589.7 496 63.5
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 2.5e-164 582.8 568 57.4
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.2e-161 573.9 549 57.6
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 4.9e-160 568.5 494 61.5
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 2.7e-158 562.8 486 60.3
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.5e-156 557.0 501 59.9
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.5e-156 557.0 427 65.3
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 9.7e-156 554.3 427 64.9
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 3.3e-148 529.3 506 56.7
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-147 526.6 474 59.9
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 2.8e-147 526.2 407 66.1
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.9e-143 513.5 394 68.0
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 3.2e-143 512.7 508 55.5
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.1e-140 504.2 417 62.8
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 6.7e-133 478.4 501 54.9
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 8.2e-131 471.5 363 68.0
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.2e-124 451.1 458 51.5
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 4.5e-121 439.1 448 50.9
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 3.5e-113 412.9 267 75.7
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.0e-109 399.8 229 84.3
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.4e-93 347.8 200 84.0
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 3.1e-93 346.7 201 83.1
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 2.6e-92 343.6 268 66.0
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.2e-90 336.7 238 70.6
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.2e-90 336.7 238 70.6
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 9.2e-90 335.1 293 63.5
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 4.7e-78 296.2 230 67.4
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 1.1e-77 295.0 188 76.1
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 2.4e-77 293.9 322 48.8
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 3.1e-77 293.5 306 48.7
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 9.9e-76 288.5 327 46.8
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.2e-74 283.5 217 68.2
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 3.5e-73 280.0 201 67.7
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 4.6e-73 279.6 241 61.4
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.7e-72 277.7 231 63.2
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 2.6e-68 263.8 178 74.2
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 5.8e-68 262.7 213 62.9
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.0e-64 251.9 228 57.9
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.4e-59 232.6 163 70.6
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.2e-52 211.8 157 67.5
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.5e-52 211.5 168 60.7
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 2.9e-43 180.6 507 26.2
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.3e-39 166.8 150 57.3
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.9e-37 159.5 234 46.2
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.2e-33 148.7 481 31.4
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 9.7e-31 139.0 139 51.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.8e-30 137.5 150 52.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.5e-26 123.2 146 46.6
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-22 112.1 98 54.1
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 7.0e-21 106.3 277 33.2
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.6e-20 104.4 55 89.1
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 9.7e-15 85.9 63 66.7
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 7.0e-13 79.7 52 65.4
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.2e-12 79.0 297 30.0
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 1.7e-11 75.1 150 34.7
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.0e-11 73.6 71 54.9
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 5.0e-11 73.6 78 48.7
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 3.6e-09 67.4 69 59.4
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.0e-08 64.3 102 41.2


User provided reference genes

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