Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.5e-59 231.9 116 100.0
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.5e-31 137.5 119 68.1
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 9.7e-27 123.6 117 58.1
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.2e-26 122.5 118 56.8
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.4e-25 119.8 114 62.3
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 2.4e-25 119.0 115 58.3
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 2.4e-25 119.0 116 56.9
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 4.1e-25 118.2 117 58.1
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 4.1e-25 118.2 118 55.9
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.3e-25 117.9 116 58.6
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 7.0e-25 117.5 115 57.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.2e-24 116.7 114 60.5
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 2.0e-24 115.9 117 55.6
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.0e-24 115.9 116 56.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.5e-24 114.8 113 54.9
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 2.9e-23 112.1 112 55.4
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.8e-23 111.7 120 53.3
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 5.0e-23 111.3 114 57.9
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.0e-23 111.3 120 53.3
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.5e-23 110.9 113 54.0
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 6.5e-23 110.9 117 56.4
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.1e-22 110.2 114 56.1
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.1e-22 110.2 116 56.0
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.5e-22 109.8 120 57.5
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.9e-22 109.4 118 61.9
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 2.5e-22 109.0 113 54.9
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 4.2e-22 108.2 109 55.0
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 5.5e-22 107.8 109 56.0
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 7.2e-22 107.5 112 54.5
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 9.4e-22 107.1 117 53.8
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 9.4e-22 107.1 120 55.0
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.2e-21 106.7 119 53.8
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.2e-21 106.7 116 52.6
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.6e-21 106.3 124 54.8
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.1e-21 105.9 117 53.0
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.7e-21 105.5 117 53.0
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.7e-21 104.8 115 52.2
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 6.1e-21 104.4 113 53.1
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 6.1e-21 104.4 113 54.0
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 6.1e-21 104.4 113 54.0
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 8.0e-21 104.0 118 52.5
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.4e-20 103.2 119 52.1
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.3e-20 102.4 115 53.0
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 4.0e-20 101.7 117 57.3
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 6.8e-20 100.9 115 56.5
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.0e-19 99.4 113 51.3
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 7.5e-19 97.4 111 51.4
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.7e-18 96.3 115 50.4
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 2.8e-18 95.5 114 50.0
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 2.8e-18 95.5 114 50.0
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 3.7e-18 95.1 115 51.3
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 3.1e-17 92.0 120 49.2
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 9.1e-17 90.5 105 50.5
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.2e-16 90.1 121 48.8
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.6e-16 89.7 120 50.8
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 8.5e-15 84.0 118 45.8
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 1.1e-14 83.6 112 46.4
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 1.1e-14 83.6 110 53.6
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.1e-14 83.6 124 48.4
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.2e-13 80.1 110 47.3
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 2.1e-13 79.3 118 43.2
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 2.1e-13 79.3 78 56.4
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.7e-13 79.0 123 43.9
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 2.7e-13 79.0 75 61.3
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 3.6e-13 78.6 123 43.1
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.4e-12 76.6 118 42.4
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.4e-12 76.6 117 45.3
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.8e-12 76.3 113 46.9
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 5.2e-12 74.7 120 45.0
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.5e-11 73.2 102 45.1
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 2.0e-11 72.8 117 42.7
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.6e-11 72.4 123 40.7
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.8e-10 68.2 114 44.7
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.4e-09 66.6 88 48.9
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.4e-09 65.9 108 43.5
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 4.1e-09 65.1 61 60.7
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.4e-09 64.7 84 50.0
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 7.0e-09 64.3 56 64.3
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 7.0e-09 64.3 115 39.1
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.6e-08 63.2 59 61.0
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.6e-08 63.2 59 61.0
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.6e-08 63.2 59 61.0
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.6e-08 63.2 59 61.0
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.6e-08 63.2 59 61.0
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 1.6e-08 63.2 53 66.0
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.6e-08 63.2 120 41.7
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.0e-08 62.8 90 48.9
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 2.0e-08 62.8 67 58.2
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 2.0e-08 62.8 125 40.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 2.7e-08 62.4 101 41.6
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 7.7e-08 60.8 80 50.0
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 7.7e-08 60.8 53 62.3
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 7.7e-08 60.8 53 62.3
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.0e-07 60.5 53 60.4
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.3e-07 59.3 50 66.0
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 2.9e-07 58.9 40 80.0
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 5.0e-07 58.2 47 68.1
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 8.6e-07 57.4 107 36.4
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.9e-06 56.2 53 58.5
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.9e-06 56.2 53 58.5
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.5e-06 55.8 67 50.7
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 4.2e-06 55.1 86 43.0
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 5.5e-06 54.7 53 56.6


User provided reference genes

Program Settings