Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 3.8e-207 724.5 357 100.0
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 2.1e-181 639.0 350 89.1
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 2.1e-181 639.0 351 88.9
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 4.9e-178 627.9 350 87.1
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 4.1e-177 624.8 350 87.4
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.4e-177 624.4 350 87.4
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.7e-176 622.1 350 87.1
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 3.9e-175 618.2 343 87.5
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 2.8e-173 612.1 348 86.8
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 3.6e-173 611.7 339 87.3
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 8.1e-173 610.5 351 86.3
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.1e-172 610.1 350 84.9
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 1.8e-172 609.4 346 86.4
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 2.3e-172 609.0 353 85.0
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 3.1e-172 608.6 353 85.0
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 5.2e-172 607.8 349 84.8
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 6.8e-172 607.4 350 84.6
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 6.8e-172 607.4 349 85.1
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.6e-171 605.5 350 84.6
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 3.4e-171 605.1 330 87.9
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 5.8e-171 604.4 345 85.5
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 7.6e-171 604.0 346 85.0
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 9.9e-171 603.6 330 89.1
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 1.7e-170 602.8 345 85.5
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 2.2e-170 602.4 331 87.3
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 2.2e-170 602.4 333 87.1
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 4.9e-170 601.3 351 83.2
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.9e-169 599.4 349 84.0
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 5.4e-169 597.8 351 83.2
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 7.8e-168 594.0 333 86.5
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 1.3e-167 593.2 337 86.1
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 1.7e-167 592.8 344 84.0
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 1.7e-167 592.8 338 85.8
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 3.9e-167 591.7 347 83.3
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 5.1e-167 591.3 331 86.4
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 8.6e-167 590.5 330 85.8
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 1.1e-166 590.1 329 86.6
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 2.5e-166 589.0 330 86.7
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 3.3e-166 588.6 330 85.8
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 3.3e-166 588.6 347 83.0
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 4.3e-166 588.2 331 85.8
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 7.3e-166 587.4 334 85.6
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 7.3e-166 587.4 331 85.2
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 9.6e-166 587.0 351 83.2
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 2.8e-165 585.5 335 85.4
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 4.7e-165 584.7 325 86.8
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 1.1e-164 583.6 353 81.3
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 1.1e-164 583.6 352 80.7
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.8e-164 582.8 309 90.0
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.8e-164 582.8 379 77.0
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 8.9e-164 580.5 353 80.2
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 8.9e-164 580.5 338 84.6
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 1.2e-163 580.1 328 85.4
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 1.5e-163 579.7 329 83.0
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.5e-163 579.7 330 85.2
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 2.0e-163 579.3 330 83.6
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 2.6e-163 578.9 330 84.8
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 9.9e-163 577.0 326 85.3
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 1.3e-162 576.6 344 83.7
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.4e-161 573.2 345 79.7
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 1.9e-161 572.8 351 80.9
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 6.0e-160 567.8 349 79.4
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 1.0e-159 567.0 322 85.7
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 2.5e-158 562.4 307 86.6
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 4.3e-158 561.6 327 83.2
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 8.1e-157 557.4 320 83.8
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 5.3e-156 554.7 331 82.5
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 2.2e-154 549.3 320 82.2
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 1.4e-153 546.6 330 79.1
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 1.4e-153 546.6 330 79.1
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 4.2e-153 545.0 330 78.5
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.2e-152 543.5 330 78.2
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 1.2e-152 543.5 330 77.9
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 3.3e-150 535.4 351 74.9
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 3.3e-150 535.4 338 75.1
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 5.6e-150 534.6 330 76.7
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 9.6e-150 533.9 330 76.7
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 9.6e-150 533.9 330 76.7
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 1.3e-149 533.5 330 75.8
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 2.1e-149 532.7 353 72.5
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 2.1e-149 532.7 349 78.5
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 3.6e-149 531.9 330 76.7
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 3.6e-149 531.9 330 76.4
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.6e-149 531.9 355 77.2
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 4.0e-148 528.5 312 80.4
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.2e-147 526.9 336 75.3
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 1.5e-147 526.6 330 75.8
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 4.5e-147 525.0 371 71.4
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 2.4e-145 519.2 331 78.9
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 1.2e-144 516.9 312 83.3
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 6.0e-144 514.6 332 76.2
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 1.3e-143 513.5 330 77.6
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 4.8e-141 505.0 347 70.9
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 6.2e-141 504.6 346 70.8
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 4.0e-140 501.9 398 66.6
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 9.0e-140 500.7 330 72.4
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 3.8e-138 495.4 265 88.7
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 6.5e-138 494.6 270 88.1
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 1.4e-137 493.4 326 71.8
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 1.0e-135 487.3 350 73.1
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 4.1e-132 475.3 342 67.0
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.3e-130 470.3 329 70.5
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 7.4e-126 454.5 266 84.6
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 1.6e-125 453.4 319 68.0
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 4.8e-125 451.8 310 74.5
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 1.7e-122 443.4 352 67.9
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 2.9e-122 442.6 309 68.6
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 2.9e-114 416.0 353 59.8
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 6.5e-114 414.8 307 63.2
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 8.5e-114 414.5 220 89.5
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.8e-92 343.6 177 91.5
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 4.5e-91 339.0 184 88.6
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 3.0e-87 326.2 210 75.7
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 3.4e-86 322.8 170 89.4
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 2.6e-70 270.0 172 72.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 8.6e-66 255.0 279 48.4
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 8.6e-50 201.8 123 86.2
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 7.6e-46 188.7 348 36.2
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 3.3e-41 173.3 93 84.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 8.4e-37 158.7 116 66.4
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 5.6e-33 146.0 88 75.0
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 6.4e-29 132.5 119 60.5
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.8e-23 114.4 66 72.7
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.9e-18 96.7 76 63.2
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 8.7e-18 95.5 74 68.9
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 8.7e-18 95.5 81 59.3
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 4.3e-17 93.2 131 42.0
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.5e-14 83.2 44 86.4
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 7.6e-14 82.4 41 85.4
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 6.5e-13 79.3 115 47.0
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 1.3e-10 71.6 93 45.2
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 4.1e-07 60.1 59 54.2
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 1.2e-06 58.5 68 47.1


User provided reference genes

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