Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 7.1e-270 933.3 466 100.0
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 9.8e-187 657.1 464 71.6
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.6e-179 632.5 462 68.6
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 5.4e-177 624.8 466 67.8
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.7e-176 622.5 465 66.0
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 5.1e-175 618.2 461 65.9
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.5e-174 616.7 466 66.7
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 2.5e-174 615.9 466 65.7
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 3.3e-174 615.5 468 65.8
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 5.6e-174 614.8 465 66.2
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 3.6e-173 612.1 461 65.3
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.8e-172 607.8 469 67.8
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 2.2e-170 602.8 463 63.5
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 4.9e-170 601.7 465 65.6
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.6e-168 596.7 465 63.0
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.6e-168 596.7 453 65.8
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 3.5e-168 595.5 465 64.1
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 4.6e-168 595.1 518 59.7
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.3e-167 593.6 470 63.6
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.3e-167 593.6 470 63.6
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 5.1e-167 591.7 462 62.8
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 3.3e-166 589.0 452 64.8
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 5.6e-166 588.2 470 63.2
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 5.6e-166 588.2 463 62.6
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 1.2e-165 587.0 468 62.0
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.1e-165 586.3 466 63.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 3.1e-164 582.4 448 64.7
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 6.8e-164 581.3 464 63.6
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 8.9e-164 580.9 455 64.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 3.4e-163 578.9 465 61.3
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 5.8e-163 578.2 464 62.9
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 5.8e-163 578.2 457 63.2
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 2.2e-162 576.2 457 61.3
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 4.9e-162 575.1 457 61.7
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 6.4e-162 574.7 465 61.9
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 5.4e-161 571.6 465 61.1
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 5.4e-161 571.6 468 61.1
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 7.1e-161 571.2 457 61.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 7.1e-161 571.2 464 62.1
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 7.8e-160 567.8 465 60.4
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 7.8e-160 567.8 498 59.2
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.3e-159 566.2 452 63.5
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 3.9e-159 565.5 465 60.9
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 3.3e-158 562.4 457 60.4
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 9.6e-158 560.8 465 60.2
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 4.8e-157 558.5 466 60.1
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 6.2e-157 558.1 465 60.0
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 6.2e-157 558.1 452 60.8
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 8.1e-157 557.8 457 60.6
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.0e-156 555.4 465 60.2
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 5.3e-156 555.1 455 58.5
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 9.9e-155 550.8 465 58.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.7e-154 550.1 459 59.0
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.9e-154 549.3 465 58.5
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 4.9e-154 548.5 458 60.3
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 6.4e-154 548.1 465 59.4
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.9e-153 546.6 464 58.2
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.9e-153 546.6 467 58.5
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 9.3e-153 544.3 465 59.8
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 9.3e-153 544.3 467 58.9
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.3e-151 540.4 463 59.0
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 8.7e-151 537.7 466 59.7
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.1e-150 537.3 465 58.1
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 5.6e-150 535.0 462 55.8
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 9.6e-150 534.3 458 57.2
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 8.1e-149 531.2 466 56.0
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.3e-148 528.5 436 60.1
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 5.3e-148 528.5 462 60.0
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.2e-147 527.3 465 57.0
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 3.4e-147 525.8 466 56.0
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.5e-147 525.4 436 59.6
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 8.4e-146 521.2 460 56.1
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 7.1e-145 518.1 463 53.1
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.6e-144 516.9 460 55.0
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.3e-143 513.8 464 57.1
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 2.3e-143 513.1 457 55.4
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.3e-143 513.1 461 55.3
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 3.9e-143 512.3 420 60.2
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 3.9e-143 512.3 456 55.0
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 5.1e-143 511.9 461 54.9
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 6.7e-143 511.5 461 54.7
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.1e-142 510.8 457 55.6
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.5e-142 510.4 458 57.4
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 4.3e-142 508.8 458 54.4
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.6e-142 508.4 440 60.0
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 9.6e-142 507.7 461 54.2
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.6e-141 506.9 456 55.3
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 8.1e-141 504.6 462 54.3
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 8.1e-141 504.6 459 54.2
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 8.1e-141 504.6 456 55.3
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.2e-139 500.7 465 53.8
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 2.0e-139 500.0 455 55.6
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 4.2e-137 492.3 459 53.4
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.3e-135 487.3 430 56.3
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 3.7e-133 479.2 466 52.4
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 6.2e-133 478.4 423 56.5
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.4e-132 477.2 467 52.9
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.4e-131 472.6 467 51.8
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 5.0e-130 468.8 494 48.6
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.0e-127 461.1 462 51.1
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 9.0e-124 448.0 295 75.3
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.7e-122 443.7 469 50.5
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 8.2e-117 424.9 427 49.4
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 2.0e-115 420.2 450 48.0
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 7.7e-115 418.3 423 53.7
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 2.2e-114 416.8 493 44.6
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 5.7e-102 375.6 470 43.0
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.9e-97 360.5 495 42.8
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 4.5e-91 339.3 286 58.4
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.2e-88 331.3 369 46.3
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.2e-88 331.3 369 46.3
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 2.8e-85 320.1 528 38.1
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 1.8e-79 300.8 467 39.2
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 5.9e-75 285.8 513 35.1
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 3.0e-66 256.9 324 47.2
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.6e-64 251.1 496 31.5
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.2e-61 240.7 191 63.9
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 6.8e-47 192.6 162 59.3
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 2.6e-46 190.7 162 58.6
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 7.6e-46 189.1 372 32.3
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.9e-45 187.2 367 35.1
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 9.0e-39 165.6 127 59.1
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 9.3e-36 155.6 215 46.0
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 2.1e-35 154.5 450 25.6
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.9e-33 147.9 115 60.9
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.3e-33 146.7 127 55.9
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.3e-33 146.7 127 55.9
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.1e-32 144.4 124 56.5
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.8e-31 141.4 232 36.6
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 5.8e-30 136.3 103 60.2
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.9e-29 134.0 323 28.5
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.9e-25 121.3 267 31.5
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 4.5e-22 110.2 124 45.2
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.8e-18 98.2 171 38.0
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.6e-14 84.3 69 60.9
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 5.0e-13 80.1 85 51.8
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 8.5e-13 79.3 85 51.8
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.0e-10 72.4 73 52.1
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 1.4e-07 62.0 38 68.4
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.5e-06 58.5 39 61.5


User provided reference genes

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