Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.2e-81 305.8 184 100.0
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 3.9e-30 135.6 146 69.9
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.1e-24 117.5 146 60.3
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.6e-23 113.6 123 71.5
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.6e-23 112.1 152 63.2
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.0e-22 110.9 155 57.4
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.0e-22 110.9 152 60.5
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.1e-22 108.6 152 61.2
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 6.7e-22 108.2 150 65.3
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.5e-21 107.1 154 60.4
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-21 107.1 124 71.0
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 2.8e-20 102.8 84 84.5
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 3.7e-20 102.4 138 53.6
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.8e-20 102.1 111 55.9
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 8.2e-20 101.3 97 59.8
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.8e-19 100.1 124 66.9
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.8e-19 100.1 124 67.7
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 3.1e-19 99.4 114 59.6
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 3.1e-19 99.4 137 59.9
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.1e-19 99.4 124 66.1
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 5.3e-19 98.6 165 55.2
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 9.1e-19 97.8 122 48.4
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.1e-19 97.8 129 56.6
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.1e-19 97.8 94 58.5
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 9.1e-19 97.8 126 50.8
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.2e-18 97.4 77 96.1
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.5e-18 97.1 119 49.6
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.0e-18 96.7 112 75.0
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 2.6e-18 96.3 145 60.7
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 5.9e-18 95.1 53 86.8
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.0e-17 94.4 145 60.0
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.3e-17 94.0 151 57.0
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.3e-17 94.0 79 83.5
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.7e-17 93.6 161 52.2
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 2.2e-17 93.2 103 68.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.9e-17 92.8 105 54.3
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 3.8e-17 92.4 117 47.9
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.8e-17 92.4 62 80.6
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 5.0e-17 92.0 125 49.6
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 5.0e-17 92.0 103 53.4
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 5.0e-17 92.0 56 78.6
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 6.5e-17 91.7 123 51.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 6.5e-17 91.7 123 51.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 6.5e-17 91.7 123 51.2
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 8.5e-17 91.3 116 47.4
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 8.5e-17 91.3 154 57.8
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.1e-16 90.9 59 86.4
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.1e-16 90.9 153 54.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.1e-16 90.9 148 60.8
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.1e-16 90.9 83 86.7
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.4e-16 90.5 123 50.4
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.4e-16 90.5 112 54.5
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.4e-16 90.5 127 46.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.9e-16 90.1 102 76.5
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.9e-16 90.1 47 89.4
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 2.5e-16 89.7 54 77.8
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 2.5e-16 89.7 54 77.8
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 2.5e-16 89.7 117 49.6
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 3.2e-16 89.4 93 59.1
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.2e-16 89.4 56 80.4
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 3.2e-16 89.4 147 53.1
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 4.2e-16 89.0 104 51.9
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 4.2e-16 89.0 104 51.9
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 4.2e-16 89.0 141 60.3
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 4.2e-16 89.0 90 58.9
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.2e-16 89.0 68 67.6
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 7.2e-16 88.2 121 52.9
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 7.2e-16 88.2 45 88.9
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 9.4e-16 87.8 80 87.5
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 9.4e-16 87.8 144 52.8
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-15 87.4 124 46.8
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.2e-15 87.4 124 46.8
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.2e-15 87.4 45 88.9
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.2e-15 87.4 45 88.9
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.2e-15 87.4 45 88.9
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 2.1e-15 86.7 125 47.2
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.1e-15 86.7 78 61.5
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 3.6e-15 85.9 57 77.2
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 4.7e-15 85.5 62 75.8
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 6.1e-15 85.1 142 55.6
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 7.9e-15 84.7 92 54.3
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 7.9e-15 84.7 85 72.9
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 7.9e-15 84.7 50 78.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.0e-14 84.3 97 54.6
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-14 84.3 48 81.2
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-14 84.3 47 83.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.0e-14 84.3 47 83.0
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.0e-14 84.3 63 71.4
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.4e-14 84.0 121 51.2
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.8e-14 83.6 138 47.8
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.3e-14 83.2 144 56.9
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.3e-14 83.2 61 70.5
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.0e-14 82.8 45 84.4
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 3.9e-14 82.4 90 54.4
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 5.1e-14 82.0 119 47.1
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 5.1e-14 82.0 112 48.2
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 5.1e-14 82.0 110 50.9
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 6.7e-14 81.6 43 86.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.1e-13 80.9 74 59.5
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.1e-13 80.9 127 46.5
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.1e-13 80.9 41 92.7
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 3.3e-13 79.3 107 53.3
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 3.3e-13 79.3 106 47.2
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 4.4e-13 79.0 82 53.7
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 7.4e-13 78.2 42 88.1
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.3e-12 77.4 60 71.7
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.3e-12 77.4 61 60.7
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 2.2e-12 76.6 50 72.0
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 2.8e-12 76.3 85 52.9
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 2.8e-12 76.3 99 47.5
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.8e-12 76.3 40 87.5
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 3.7e-12 75.9 46 82.6
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 3.7e-12 75.9 46 82.6
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 4.8e-12 75.5 79 75.9
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 4.8e-12 75.5 145 54.5
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 4.8e-12 75.5 78 79.5
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 6.3e-12 75.1 105 53.3
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 6.3e-12 75.1 39 89.7
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 4.1e-11 72.4 35 88.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 7.0e-11 71.6 35 88.6
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 7.0e-11 71.6 61 60.7
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 7.0e-11 71.6 38 84.2
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 9.1e-11 71.2 55 65.5
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 9.1e-11 71.2 84 51.2
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.6e-10 70.5 88 51.1
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.7e-09 67.0 52 61.5
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 2.9e-09 66.2 203 41.9
Oeu033500.1 Olea europaea HOM05D005853 ORTHO05D007308 3.2e-08 62.8 59 86.4
Dinv38038 Davidia involucrata HOM05D005853 ORTHO05D007308 2.7e-07 59.7 46 73.9
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 2.3e-06 56.6 55 49.1
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 2.3e-06 56.6 42 73.8
Actinidia21670 Actinidia chinensis HOM05D005853 ORTHO05D007308 6.7e-06 55.1 78 46.2


User provided reference genes

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