Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 5.5e-59 230.7 112 100.0
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.0e-24 115.9 96 57.3
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.6e-21 106.3 91 54.9
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.6e-21 106.3 97 54.6
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 4.5e-21 104.8 95 53.7
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.7e-20 102.8 92 55.4
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 2.2e-20 102.4 91 52.7
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.8e-20 101.7 100 52.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 6.5e-20 100.9 97 50.5
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.5e-19 99.8 100 49.0
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.5e-19 99.0 97 53.6
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 7.2e-19 97.4 99 50.5
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 7.2e-19 97.4 97 48.5
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 9.4e-19 97.1 97 50.5
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 9.4e-19 97.1 99 50.5
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.2e-18 96.7 88 54.5
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.2e-18 96.7 101 47.5
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.6e-18 96.3 92 51.1
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.1e-18 95.9 99 48.5
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.7e-18 95.5 100 49.0
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.7e-18 95.5 99 49.5
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 4.7e-18 94.7 111 46.8
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.7e-18 94.7 97 48.5
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 4.7e-18 94.7 90 47.8
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.0e-17 93.6 104 48.1
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.0e-17 93.6 97 49.5
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.0e-17 93.6 97 49.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.2e-16 90.1 98 51.0
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.6e-16 89.0 91 50.5
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.6e-16 89.0 91 50.5
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.6e-16 89.0 101 45.5
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.6e-16 89.0 101 45.5
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.6e-16 89.0 99 46.5
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.6e-16 89.0 98 45.9
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.3e-16 88.6 98 44.9
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 3.3e-16 88.6 97 46.4
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 7.5e-16 87.4 97 42.3
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 7.5e-16 87.4 94 47.9
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 7.5e-16 87.4 101 42.6
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 7.5e-16 87.4 95 49.5
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 9.7e-16 87.0 89 44.9
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 9.7e-16 87.0 104 51.0
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.3e-15 86.7 88 48.9
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.7e-15 86.3 92 43.5
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.8e-15 85.5 93 48.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 4.8e-15 84.7 90 47.8
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 4.8e-15 84.7 97 49.5
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 4.8e-15 84.7 97 49.5
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 6.3e-15 84.3 87 49.4
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.1e-14 83.6 97 46.4
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.1e-14 83.6 98 49.0
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-14 83.2 100 45.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-14 83.2 98 45.9
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-14 83.2 98 45.9
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.4e-14 83.2 98 45.9
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 9.1e-14 80.5 88 44.3
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 9.1e-14 80.5 88 45.5
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 9.1e-14 80.5 94 45.7
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 9.1e-14 80.5 97 41.2
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.2e-13 80.1 91 45.1
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.6e-13 79.7 89 47.2
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.0e-13 79.3 97 42.3
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.0e-13 79.3 97 42.3
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.0e-13 79.3 100 43.0
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 2.0e-13 79.3 100 44.0
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.0e-13 79.3 82 48.8
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.0e-13 79.3 92 41.3
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.7e-13 79.0 99 41.4
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.7e-13 79.0 97 40.2
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 4.5e-13 78.2 95 42.1
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 4.5e-13 78.2 74 48.6
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 4.5e-13 78.2 88 44.3
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 4.5e-13 78.2 92 40.2
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.9e-13 77.8 93 41.9
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 5.9e-13 77.8 93 45.2
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 7.7e-13 77.4 101 41.6
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 7.7e-13 77.4 88 43.2
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 7.7e-13 77.4 54 63.0
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 7.7e-13 77.4 76 46.1
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 7.7e-13 77.4 76 46.1
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.3e-12 76.6 88 44.3
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.3e-12 76.6 88 44.3
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.3e-12 76.6 93 40.9
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.7e-12 76.3 95 40.0
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.7e-12 76.3 74 45.9
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.2e-12 75.9 88 43.2
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.2e-12 75.9 88 42.0
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.2e-12 75.9 88 42.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 3.8e-12 75.1 103 44.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 3.8e-12 75.1 86 40.7
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 6.5e-12 74.3 94 41.5
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 6.5e-12 74.3 89 42.7
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.5e-12 73.9 93 39.8
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 8.5e-12 73.9 84 42.9
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.1e-11 73.6 97 40.2
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.5e-11 73.2 91 39.6
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.5e-11 73.2 93 41.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.5e-11 73.2 91 39.6
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.5e-11 73.2 112 42.9
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.5e-11 73.2 94 42.6
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.5e-11 73.2 89 42.7
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.9e-11 72.8 93 41.9
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.9e-11 72.8 85 43.5
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.5e-11 72.4 90 40.0
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.5e-11 72.4 85 50.6
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.5e-11 72.4 99 39.4
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 3.2e-11 72.0 90 40.0
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 3.2e-11 72.0 93 43.0
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.2e-11 71.6 93 43.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 5.5e-11 71.2 103 42.7
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 7.2e-11 70.9 100 37.0
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 7.2e-11 70.9 79 45.6
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 9.4e-11 70.5 106 40.6
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 9.4e-11 70.5 109 40.4
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-10 70.1 97 39.2
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.2e-10 70.1 112 37.5
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.6e-10 69.7 105 40.0
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.1e-10 69.3 97 38.1
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.1e-10 69.3 105 40.0
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 2.1e-10 69.3 62 53.2
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 2.7e-10 68.9 97 37.1
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 3.6e-10 68.6 105 39.0
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 4.7e-10 68.2 93 40.9
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 4.7e-10 68.2 102 41.2
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.4e-09 66.6 63 50.8
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.4e-09 66.6 97 37.1
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 3.0e-09 65.5 91 42.9
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 4.0e-09 65.1 93 37.6
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.2e-09 64.7 92 42.4
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 5.2e-09 64.7 94 36.2
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 6.8e-09 64.3 99 41.4
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 4.4e-08 61.6 104 35.6
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 5.7e-08 61.2 86 40.7
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 9.8e-08 60.5 87 41.4
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 2.2e-07 59.3 95 40.0
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.4e-06 56.6 105 30.5
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.8e-06 56.2 83 41.0


User provided reference genes

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