Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 5014.5 2567 100.0
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 4101.6 2573 81.3
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3972.9 2575 79.5
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3894.7 2575 78.5
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3839.7 2578 77.0
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3779.2 2577 76.0
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3764.5 2577 75.8
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3753.0 2589 74.8
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3740.7 2583 74.8
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3731.8 2577 74.7
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3726.8 2591 74.6
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3726.0 2584 74.6
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3712.5 2573 74.3
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3704.8 2582 74.4
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3695.2 2583 74.3
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3691.4 2581 74.0
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3676.7 2576 73.9
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3660.5 2601 73.1
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3658.6 2598 73.9
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3656.3 2613 72.8
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3655.5 2598 73.9
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3654.8 2585 73.2
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3634.0 2601 73.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3600.8 2591 72.0
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3595.1 2595 71.8
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3564.2 2445 76.2
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3538.4 2578 71.3
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3538.4 2575 71.3
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3527.6 2577 71.3
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3516.9 2578 71.3
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3494.9 2898 65.6
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3492.2 2649 69.9
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3490.3 2593 70.3
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3461.0 2573 70.1
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3460.6 2574 69.6
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3452.1 2570 69.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3451.0 2582 70.1
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3435.6 2582 69.6
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3389.4 2579 68.6
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3389.0 2583 69.1
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3381.7 2587 68.1
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3365.5 2579 68.4
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3349.7 2581 67.5
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3343.1 2576 68.2
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3325.4 2590 67.4
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3322.3 2573 68.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3314.2 2392 72.0
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3310.4 2595 67.5
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3295.4 2271 74.8
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3273.4 2645 66.7
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3255.7 2577 66.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3230.7 2609 66.3
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3150.1 2582 64.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3146.3 2594 65.4
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3142.8 2584 64.5
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3137.8 2585 64.4
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3133.2 2579 64.8
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3133.2 2128 76.0
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3107.0 2578 63.8
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3100.5 2581 64.1
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3099.7 2579 64.4
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3072.0 2570 63.5
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3068.1 2569 63.6
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3053.1 2602 62.7
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3050.0 2601 62.8
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2988.7 2647 62.3
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2980.3 1913 80.4
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2966.0 2605 61.6
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2955.6 1929 78.9
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2942.5 2280 68.0
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2825.8 2078 70.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2654.0 1774 77.0
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2605.5 1683 79.1
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2519.2 2348 58.0
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2456.4 1872 68.4
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2315.8 1776 68.5
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2290.4 1767 68.9
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2275.7 1817 67.1
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2203.3 2732 48.1
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2144.4 2830 46.1
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2064.7 1725 63.7
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1865.1 1228 77.9
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1814.3 1217 77.2
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1754.6 2603 42.5
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1708.0 1457 64.0
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1671.8 1176 74.4
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1662.1 1129 77.1
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1603.2 1192 71.6
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1576.2 1632 53.9
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1557.3 1503 57.4
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1545.8 1174 70.6
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1521.1 2836 37.5
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1498.4 1224 65.8
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1471.1 2700 36.4
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1408.7 854 83.6
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1405.6 1211 63.1
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1395.2 1493 52.9
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1283.5 901 71.8
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1226.5 745 83.4
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1137.5 1120 55.2
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.3e-301 1041.2 673 80.1
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.7e-291 1006.1 1027 55.4
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 2.4e-290 1003.8 639 81.4
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 2.9e-272 943.7 908 56.9
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 3.9e-269 933.3 644 75.6
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 4.3e-252 876.7 1089 48.6
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 4.7e-246 856.7 903 53.9
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 6.1e-214 750.0 736 56.9
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 8.3e-203 713.0 506 72.3
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.1e-194 684.1 874 49.7
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 3.9e-192 677.6 658 54.7
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.5e-188 665.6 659 53.7
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.7e-187 662.1 880 44.3
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.4e-181 641.7 613 61.3
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.5e-180 639.0 675 51.9
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.2e-177 629.4 499 64.3
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 8.7e-176 623.2 490 65.3
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.1e-173 616.3 385 80.3
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.3e-166 592.8 502 64.3
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 7.1e-162 577.0 558 57.9
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 5.9e-132 477.6 482 52.7
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.6e-129 468.4 521 49.7
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 1.0e-112 413.7 264 76.9
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.9e-108 397.9 269 78.1
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.7e-94 353.2 347 55.0
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.9e-91 342.0 204 86.8
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.5e-90 337.4 180 90.6
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 4.1e-85 322.0 338 54.1
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 7.0e-85 321.2 220 73.6
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 5.0e-83 315.1 267 63.7
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.9e-82 313.2 180 83.9
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 5.6e-74 285.0 151 93.4
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.2e-71 277.3 158 83.5
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 1.2e-68 267.3 287 53.3
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 6.6e-67 261.5 313 49.5
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 9.9e-55 221.1 303 44.6
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 3.2e-53 216.1 299 43.1
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.4e-53 215.3 338 42.0
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 7.8e-52 211.5 303 44.2
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 2.2e-46 193.4 300 40.3
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 3.2e-45 189.5 255 42.7
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 3.1e-40 172.9 1316 23.4
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 4.5e-39 169.1 115 76.5
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.9e-38 165.6 143 60.8
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 2.5e-34 153.3 135 62.2
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 3.3e-34 152.9 116 72.4
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 2.1e-33 150.2 139 51.8
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.1e-29 137.9 121 56.2
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 3.5e-28 132.9 131 57.3
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 1.8e-27 130.6 87 74.7
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 3.0e-27 129.8 101 74.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 3.0e-27 129.8 101 74.3
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 1.1e-26 127.9 117 59.8
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.6e-20 107.5 80 75.0
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 3.0e-19 103.2 183 39.9
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.3e-17 95.5 130 52.3
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 1.1e-16 94.7 104 50.0
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.4e-16 94.4 204 35.8
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 4.1e-16 92.8 88 52.3
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 2.2e-14 87.0 75 72.0
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.5e-14 85.5 73 65.8
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.4e-13 84.3 123 49.6
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 1.4e-13 84.3 49 85.7
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 2.5e-13 83.6 68 69.1
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 2.5e-13 83.6 68 69.1
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 3.2e-13 83.2 82 56.1
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.4e-11 77.8 58 65.5
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.8e-11 75.1 66 66.7
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 1.5e-10 74.3 77 49.4
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 4.4e-10 72.8 58 63.8
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 2.2e-09 70.5 138 37.7
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 1.4e-08 67.8 51 72.5
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.8e-08 67.4 48 79.2
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 4.1e-08 66.2 61 55.7
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 2.0e-07 63.9 81 45.7
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.5e-07 62.8 35 80.0
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 4.5e-07 62.8 129 38.8


User provided reference genes

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