Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1256 Trochodendron aralioides HOM05D008160 ORTHO05D009635 5.8e-71 270.8 136 100.0
TAR626G0785 Trochodendron aralioides HOM05D008160 ORTHO05D009635 1.1e-40 170.2 140 66.4
QL06p012138 Quercus lobata HOM05D008160 ORTHO05D009635 3.3e-26 122.1 146 50.0
QL08p033125 Quercus lobata HOM05D008160 ORTHO05D009635 3.3e-26 122.1 146 50.0
Dinv05432 Davidia involucrata HOM05D008160 ORTHO05D009635 5.9e-23 111.3 130 53.1
Thecc.02G314100 Theobroma cacao HOM05D008160 ORTHO05D009635 7.2e-21 104.4 148 46.6
CiPaw.04G116300 Carya illinoinensis HOM05D008160 ORTHO05D009635 3.3e-18 95.5 148 42.6
MD09G1108700 Malus domestica HOM05D008160 ORTHO05D009635 1.1e-16 90.5 152 41.4
CiPaw.03G160200 Carya illinoinensis HOM05D008160 ORTHO05D009635 4.1e-16 88.6 151 43.0
Lj3g0006762 Lotus japonicus HOM05D008160 ORTHO05D009635 2.0e-15 86.3 141 39.7
Potri.014G153200 Populus trichocarpa HOM05D008160 ORTHO05D009635 2.0e-15 86.3 151 37.7
Prupe.3G217400 Prunus persica HOM05D008160 ORTHO05D009635 3.4e-15 85.5 145 39.3
TWI36G0727 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 4.5e-15 85.1 142 43.0
Glyma.12G099100 Glycine max HOM05D008160 ORTHO05D009635 7.7e-15 84.3 144 38.2
Potri.002G229300 Populus trichocarpa HOM05D008160 ORTHO05D009635 7.7e-15 84.3 150 37.3
Cfa014402 Carpinus fangiana HOM05D008160 ORTHO05D009635 2.2e-14 82.8 156 41.0
Haze_12867 Corylus avellana HOM05D008160 ORTHO05D009635 2.2e-14 82.8 94 52.1
Glyma.06G305400 Glycine max HOM05D008160 ORTHO05D009635 2.2e-14 82.8 147 40.8
Nn1g03539 Nelumbo nucifera HOM05D008160 ORTHO05D009635 5.0e-14 81.6 138 38.4
TWI75G1754 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 1.4e-13 80.1 144 41.0
Aqoxy1G02168 Aquilegia oxysepala HOM05D034144 ORTHO05D009635 1.9e-13 79.7 147 40.8
CANSAT64G2131 Cannabis sativa HOM05D008160 ORTHO05D009635 2.5e-13 79.3 159 35.2
TPR.G4649 Trifolium pratense HOM05D008160 ORTHO05D009635 2.5e-13 79.3 140 36.4
Eucgr.A01130 Eucalyptus grandis HOM05D008160 ORTHO05D009635 5.5e-13 78.2 150 40.0
Sabra02G0175400 Salix brachista HOM05D008160 ORTHO05D009635 5.5e-13 78.2 151 35.1
Gohir.A03G108800 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.2e-12 77.0 159 37.7
Phvul.011G104000 Phaseolus vulgaris HOM05D008160 ORTHO05D009635 1.2e-12 77.0 136 37.5
COL.COLO4_27706 Corchorus olitorius HOM05D008160 ORTHO05D009635 2.1e-12 76.3 144 38.2
Gohir.D13G088500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.7e-12 75.9 144 38.2
Gorai.005G149800 Gossypium raimondii HOM05D008160 ORTHO05D009635 2.7e-12 75.9 158 37.3
Lalb_Chr03g0028751 Lupinus albus HOM05D008160 ORTHO05D009635 2.7e-12 75.9 122 41.8
Manes.12G074700 Manihot esculenta HOM05D008160 ORTHO05D009635 2.7e-12 75.9 138 37.7
Gohir.D02G133900 Gossypium hirsutum HOM05D008160 ORTHO05D009635 3.6e-12 75.5 159 37.1
Ca_01599_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 6.1e-12 74.7 127 37.8
Gohir.A13G094500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.4e-11 73.6 144 38.2
TPR.G4242 Trifolium pratense HOM05D008160 ORTHO05D009635 1.8e-11 73.2 144 35.4
Gorai.013G101200 Gossypium raimondii HOM05D008160 ORTHO05D009635 5.1e-11 71.6 143 37.1
Hma1.2p1_0328F.1_g126920 Hydrangea macrophylla HOM05D008160 ORTHO05D009635 8.8e-11 70.9 71 53.5
Ciclev10017235m.g Citrus clementina HOM05D008160 ORTHO05D009635 1.5e-10 70.1 142 35.9
LjContig00412g0003580 Lotus japonicus HOM05D008160 ORTHO05D009635 1.5e-10 70.1 137 36.5
Lalb_Chr19g0135851 Lupinus albus HOM05D008160 ORTHO05D009635 2.0e-10 69.7 148 36.5
CARHR097620 Cardamine hirsuta HOM05D010757 ORTHO05D009635 2.6e-10 69.3 139 35.3
VMungo1127G0429 Vigna mungo HOM05D008160 ORTHO05D009635 2.6e-10 69.3 138 38.4
Ca_26933_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 5.7e-10 68.2 139 36.0
ClCG02G008690 Citrullus lanatus HOM05D008160 ORTHO05D009635 7.4e-10 67.8 142 35.2
CsaV3_2G034970 Cucumis sativus L. HOM05D008160 ORTHO05D009635 7.4e-10 67.8 145 34.5
Medtr4g048060 Medicago truncatula HOM05D008160 ORTHO05D009635 9.7e-10 67.4 143 36.4
Nn5g29373 Nelumbo nucifera HOM05D008160 ORTHO05D009635 9.7e-10 67.4 139 36.0
Glyma.13G308600 Glycine max HOM05D008160 ORTHO05D009635 1.3e-09 67.0 135 36.3
C03p51830 Brassica napus HOM05D010757 ORTHO05D009635 3.7e-09 65.5 138 34.1
MELO3C019266.2 Cucumis melo HOM05D008160 ORTHO05D009635 3.7e-09 65.5 147 34.0
Thecc.02G314300 Theobroma cacao HOM05D008160 ORTHO05D009635 3.7e-09 65.5 145 40.7
Aqoxy1G02167 Aquilegia oxysepala HOM05D034144 ORTHO05D009635 1.1e-08 63.9 147 36.7
FvH4_6g43200 Fragaria vesca HOM05D008160 ORTHO05D009635 2.4e-08 62.8 148 34.5
Sp3g19690 Schrenkiella parvula HOM05D010757 ORTHO05D009635 4.1e-08 62.0 80 42.5
FAN02G3260 Fragaria x ananassa HOM05D008160 ORTHO05D009635 5.3e-08 61.6 148 33.8
Glyma.12G193900 Glycine max HOM05D008160 ORTHO05D009635 9.1e-08 60.8 135 36.3
Thhalv10022045m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 1.5e-07 60.1 140 32.1
Cpa.g.sc8.214 Carica papaya HOM05D008160 ORTHO05D009635 2.6e-07 59.3 147 32.7
Carub.0003s2173 Capsella rubella HOM05D010757 ORTHO05D009635 3.4e-07 58.9 135 32.6
FAN09G3148 Fragaria x ananassa HOM05D008160 ORTHO05D009635 3.4e-07 58.9 149 34.2
RcHm_v2.0_Chr2g0159311 Rosa chinensis HOM05D008160 ORTHO05D009635 3.4e-07 58.9 151 33.8
RcHm_v2.0_Chr2g0159421 Rosa chinensis HOM05D008160 ORTHO05D009635 3.4e-07 58.9 151 33.8
A01p33300 Brassica napus HOM05D010757 ORTHO05D009635 4.5e-07 58.5 80 38.8
C01p42560 Brassica napus HOM05D010757 ORTHO05D009635 5.9e-07 58.2 80 38.8
BolC1t04209H Brassica oleracea HOM05D010757 ORTHO05D009635 5.9e-07 58.2 80 38.8
BraA01t03447Z Brassica rapa HOM05D010757 ORTHO05D009635 5.9e-07 58.2 80 38.8
BraA01t03448Z Brassica rapa HOM05D010757 ORTHO05D009635 5.9e-07 58.2 80 38.8
Rhsim04G0053300 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.7e-07 57.8 70 51.4
Medtr2g088370 Medicago truncatula HOM05D008160 ORTHO05D009635 1.0e-06 57.4 141 29.1
BcaC01g03493 Brassica carinata HOM05D010757 ORTHO05D009635 1.7e-06 56.6 82 37.8
Sed0017088 Sechium edule HOM05D008160 ORTHO05D009635 1.7e-06 56.6 120 37.5
Sp7g13570 Schrenkiella parvula HOM05D010757 ORTHO05D009635 2.9e-06 55.8 142 31.0
BcaB04g20576 Brassica carinata HOM05D010757 ORTHO05D009635 3.8e-06 55.5 79 38.0
Thhalv10026860m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 3.8e-06 55.5 69 42.0
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 3.8e-06 55.5 146 31.5
AL3G35800 Arabidopsis lyrata HOM05D010757 ORTHO05D009635 5.0e-06 55.1 70 40.0


User provided reference genes

Program Settings