Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 5.6e-98 360.9 181 100.0
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 9.7e-74 280.4 183 77.6
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 3.2e-69 265.4 151 84.8
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 3.2e-69 265.4 151 86.1
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 7.2e-69 264.2 151 84.1
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 7.2e-69 264.2 151 84.8
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 2.7e-68 262.3 151 82.1
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 3.6e-68 261.9 151 84.8
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 8.0e-68 260.8 155 81.3
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.0e-67 260.4 151 82.1
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.0e-67 260.4 152 81.6
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-67 260.0 151 82.1
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.3e-67 259.2 148 83.8
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 2.3e-67 259.2 151 80.1
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 5.2e-67 258.1 151 82.1
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 5.2e-67 258.1 151 81.5
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 6.7e-67 257.7 150 80.7
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.7e-67 257.7 151 82.8
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 6.7e-67 257.7 151 79.5
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 8.8e-67 257.3 151 82.1
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.8e-67 257.3 158 79.1
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.8e-67 257.3 151 82.1
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 8.8e-67 257.3 151 81.5
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.1e-66 256.9 151 80.1
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 2.0e-66 256.1 151 82.1
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.0e-66 256.1 145 84.8
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.6e-66 255.8 151 80.1
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 3.3e-66 255.4 150 80.0
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 3.3e-66 255.4 151 79.5
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.3e-66 255.4 155 80.0
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 3.3e-66 255.4 152 82.2
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 4.4e-66 255.0 151 80.1
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 4.4e-66 255.0 153 82.4
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 5.7e-66 254.6 151 80.8
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 5.7e-66 254.6 151 79.5
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 5.7e-66 254.6 151 80.8
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 5.7e-66 254.6 151 80.1
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 7.4e-66 254.2 153 81.0
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.7e-66 253.8 153 81.7
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.7e-66 253.8 171 76.6
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 9.7e-66 253.8 151 80.8
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 9.7e-66 253.8 151 80.8
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-65 253.4 153 81.7
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.7e-65 253.1 151 81.5
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.7e-65 253.1 150 80.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.2e-65 252.7 150 80.0
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 2.8e-65 252.3 151 79.5
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.8e-65 252.3 150 80.7
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 2.8e-65 252.3 149 81.2
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.8e-65 252.3 150 80.7
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.8e-65 252.3 151 79.5
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 3.7e-65 251.9 151 80.8
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 6.3e-65 251.1 150 80.7
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 78.8
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 80.1
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 80.1
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 78.1
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 76.8
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 8.2e-65 250.8 151 78.8
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.1e-64 250.4 150 80.7
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.1e-64 250.4 151 80.1
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 1.1e-64 250.4 151 80.1
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.4e-64 250.0 153 81.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.4e-64 250.0 151 80.1
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.4e-64 250.0 152 78.9
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 1.8e-64 249.6 151 78.1
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 3.1e-64 248.8 145 80.7
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.1e-64 248.8 154 76.6
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 7.0e-64 247.7 157 75.2
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 7.0e-64 247.7 151 78.8
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 9.1e-64 247.3 147 80.3
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 9.1e-64 247.3 151 77.5
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.2e-63 246.9 151 82.1
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 1.6e-63 246.5 150 76.7
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.6e-63 246.5 151 78.1
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.6e-63 246.5 158 75.9
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.0e-63 246.1 154 76.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 2.6e-63 245.7 151 76.2
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.6e-63 245.7 150 78.7
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 2.6e-63 245.7 151 77.5
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.0e-62 243.8 151 78.8
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.0e-62 243.8 150 78.0
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 1.7e-62 243.0 151 78.1
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.7e-62 243.0 151 78.8
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 2.2e-62 242.7 151 77.5
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 2.2e-62 242.7 151 75.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.8e-62 241.9 151 79.5
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 3.8e-62 241.9 152 74.3
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 8.5e-62 240.7 151 74.8
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 4.2e-61 238.4 150 77.3
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 5.5e-61 238.0 151 77.5
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 5.5e-61 238.0 151 74.2
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 7.2e-61 237.7 150 74.7
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 7.2e-61 237.7 150 75.3
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 9.4e-61 237.3 150 72.7
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.2e-60 236.9 157 71.3
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.2e-60 236.9 151 76.2
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.1e-60 236.1 151 76.2
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 2.7e-60 235.7 152 72.4
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 3.6e-60 235.3 150 74.0
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 4.7e-60 235.0 152 73.0
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 6.1e-60 234.6 152 72.4
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 8.0e-60 234.2 150 72.7
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.4e-59 233.4 150 74.7
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.8e-59 233.0 152 73.0
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 3.0e-59 232.3 151 75.5
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 3.0e-59 232.3 149 72.5
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 4.0e-59 231.9 149 74.5
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 5.2e-59 231.5 152 71.1
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 6.7e-59 231.1 150 73.3
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 6.7e-59 231.1 151 70.9
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 8.8e-59 230.7 150 72.0
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 8.8e-59 230.7 150 72.0
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 2.0e-58 229.6 151 72.2
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 3.3e-58 228.8 148 77.7
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.7e-57 226.5 151 72.2
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.7e-57 226.5 151 72.2
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 1.1e-56 223.8 170 64.7
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.4e-56 223.4 151 68.2
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 9.1e-56 220.7 151 72.2
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.1e-56 220.7 151 71.5
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.7e-54 216.5 150 72.0
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 8.0e-52 207.6 150 66.7
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.8e-51 206.5 149 61.7
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 8.8e-51 204.1 119 81.5
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.4e-50 202.2 143 69.2
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.7e-49 199.9 120 79.2
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.2e-49 199.5 118 80.5
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.4e-48 196.1 145 58.6
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 3.5e-47 192.2 109 80.7
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 6.6e-46 188.0 109 78.9
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.5e-45 186.8 128 68.8
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-45 186.8 153 62.1
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.0e-42 176.4 149 52.3
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 2.0e-39 166.4 179 53.6
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.0e-35 154.1 95 81.1
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.9e-32 143.3 149 44.3
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 1.6e-31 140.2 73 87.7
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.7e-30 136.7 76 85.5
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 9.5e-29 131.0 121 57.0
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.1e-27 127.5 73 76.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.8e-27 126.7 100 64.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 2.3e-27 126.3 144 44.4
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 8.9e-27 124.4 75 82.7
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.2e-25 119.8 65 84.6
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.9e-25 118.6 65 83.1
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.2e-23 114.0 75 74.7
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 7.8e-23 111.3 75 72.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 3.0e-22 109.4 78 70.5
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 2.5e-21 106.3 75 70.7
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.3e-19 99.8 149 35.6
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 6.2e-12 75.1 48 79.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 6.4e-09 65.1 42 76.2
COL.COLO4_30360 Corchorus olitorius HOM05D005040 ORTHO05D005984 2.7e-07 59.7 31 87.1


User provided reference genes

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