Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 7.3e-144 513.8 254 100.0
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.0e-77 293.1 197 76.6
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.7e-71 273.5 196 72.4
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 3.2e-67 259.2 196 67.3
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.8e-65 253.4 191 67.0
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 5.2e-65 251.9 168 71.4
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 9.8e-64 247.7 196 64.3
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.8e-62 243.4 194 63.4
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.2e-62 241.1 167 71.3
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.6e-61 240.4 196 63.3
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.6e-61 240.4 196 63.8
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.7e-61 239.6 196 64.8
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 3.5e-61 239.2 196 61.2
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 7.7e-61 238.0 197 60.4
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.9e-60 236.1 196 62.2
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 2.9e-60 236.1 196 59.7
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 3.8e-60 235.7 205 61.0
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 5.0e-60 235.3 205 60.5
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 5.0e-60 235.3 246 52.0
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 5.0e-60 235.3 196 59.2
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 8.6e-60 234.6 197 58.4
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.1e-59 234.2 197 58.9
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.1e-59 234.2 196 58.7
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.1e-59 234.2 167 68.3
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.5e-59 233.8 196 59.2
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.5e-59 233.8 206 57.3
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.5e-59 233.8 197 60.4
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 3.3e-59 232.6 205 62.0
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 5.6e-59 231.9 196 60.2
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 7.3e-59 231.5 196 61.2
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 9.5e-59 231.1 196 62.2
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 4.7e-58 228.8 197 60.9
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 4.7e-58 228.8 196 62.2
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 6.1e-58 228.4 196 61.7
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.4e-57 227.3 196 60.7
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.4e-57 227.3 196 59.7
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 5.2e-57 225.3 196 61.2
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 6.8e-57 224.9 195 57.9
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 6.8e-57 224.9 196 57.7
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 8.9e-57 224.6 194 59.3
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.2e-56 224.2 197 59.4
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.2e-56 224.2 190 60.0
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.0e-56 223.4 205 58.0
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.6e-56 223.0 197 59.4
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 3.4e-56 222.6 196 58.7
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 4.4e-56 222.2 203 58.1
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 7.5e-56 221.5 196 59.2
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.3e-55 220.7 196 59.2
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 2.2e-55 219.9 196 57.1
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.2e-55 219.9 196 58.7
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 3.7e-55 219.2 196 57.7
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 6.4e-55 218.4 196 58.2
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 6.4e-55 218.4 195 59.5
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 8.3e-55 218.0 196 57.7
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 5.4e-54 215.3 196 57.1
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 9.2e-54 214.5 205 57.1
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 1.6e-53 213.8 196 56.6
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.6e-53 213.8 196 56.1
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 2.7e-53 213.0 205 58.5
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 5.9e-53 211.8 192 57.8
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 7.8e-53 211.5 196 55.6
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 7.8e-53 211.5 197 54.8
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.0e-52 211.1 194 56.2
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.0e-52 211.1 203 56.2
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.3e-52 210.7 203 55.2
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.7e-52 210.3 196 57.7
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 3.9e-52 209.1 203 55.7
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 3.9e-52 209.1 196 56.1
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 3.9e-52 209.1 207 54.1
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 6.6e-52 208.4 171 64.9
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.5e-51 207.2 196 56.1
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 2.5e-51 206.5 234 49.1
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 7.3e-51 204.9 195 56.9
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.2e-50 204.1 194 55.2
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 2.1e-50 203.4 196 54.1
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 2.1e-50 203.4 196 54.1
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 2.1e-50 203.4 194 55.2
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 2.8e-50 203.0 196 56.1
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.8e-50 203.0 196 55.1
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 8.0e-50 201.4 196 53.1
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.0e-49 201.1 199 53.3
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.4e-49 200.7 191 53.9
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.4e-49 200.7 196 56.6
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.8e-49 200.3 196 53.6
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 5.2e-49 198.7 196 53.6
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.5e-48 197.2 205 53.7
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.6e-48 196.4 193 54.4
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 3.4e-48 196.1 196 52.0
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 9.8e-48 194.5 196 52.0
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.7e-47 193.7 196 52.6
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 3.7e-47 192.6 196 55.1
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 3.7e-47 192.6 171 59.1
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 8.3e-47 191.4 196 55.1
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 4.1e-46 189.1 197 52.3
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 4.1e-46 189.1 197 52.3
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 4.1e-46 189.1 127 73.2
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 7.0e-46 188.3 124 71.0
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 9.2e-46 188.0 197 52.3
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 9.2e-46 188.0 182 56.0
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 2.7e-45 186.4 197 51.8
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.0e-44 184.5 152 61.8
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.3e-44 184.1 167 59.3
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.3e-43 178.3 197 51.8
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 1.6e-42 177.2 197 48.7
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.1e-42 174.9 197 46.7
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 8.1e-42 174.9 207 47.8
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.1e-42 174.9 197 45.7
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.8e-41 173.7 202 46.0
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 4.0e-41 172.6 227 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.6e-40 169.9 199 44.7
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.4e-40 169.5 197 44.7
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 5.8e-40 168.7 208 49.5
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 5.8e-40 168.7 155 56.1
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 9.8e-40 167.9 179 52.5
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.2e-39 166.8 199 44.7
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.9e-39 165.6 197 43.7
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 8.3e-39 164.9 152 57.9
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 4.1e-38 162.5 217 43.3
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.7e-37 159.8 143 60.1
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 6.0e-37 158.7 145 58.6
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 2.3e-33 146.7 168 52.4
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.0e-33 146.0 146 55.5
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 6.8e-33 145.2 137 56.9
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.2e-31 140.2 89 74.2
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 1.1e-30 137.9 167 41.9
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-30 137.1 164 45.1
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.4e-30 136.7 89 70.8
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 3.5e-29 132.9 137 55.5
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 8.6e-28 128.3 146 52.7
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 1.9e-27 127.1 170 45.9
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.3e-27 126.3 194 42.8
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.8e-25 120.6 117 53.8
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.2e-24 117.9 89 64.0
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.6e-24 115.2 145 42.8
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 7.6e-24 115.2 78 67.9
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.4e-22 110.9 87 63.2
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 7.1e-22 108.6 61 80.3
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 5.6e-19 99.0 155 38.1
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.8e-18 95.9 56 78.6
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 3.1e-17 93.2 65 69.2
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 4.0e-17 92.8 56 71.4
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 2.0e-16 90.5 56 71.4
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.4e-06 57.0 50 52.0


User provided reference genes

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