Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.9e-196 688.3 337 100.0
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 3.5e-178 628.2 337 91.1
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.3e-161 573.2 335 83.0
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 1.5e-160 569.7 335 81.2
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.1e-158 562.0 335 80.0
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 6.9e-158 560.8 337 80.4
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.0e-157 559.3 335 79.4
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 2.0e-157 559.3 337 81.6
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 7.7e-157 557.4 335 80.3
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 2.5e-155 552.4 338 79.0
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 3.2e-155 552.0 337 80.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 3.2e-155 552.0 337 78.0
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 5.5e-155 551.2 337 78.0
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 7.2e-155 550.8 337 79.2
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.1e-154 549.3 337 79.2
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 2.7e-154 548.9 331 80.1
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 6.1e-154 547.7 337 77.4
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 3.9e-153 545.0 337 79.8
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 3.9e-153 545.0 335 78.2
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.1e-152 543.5 335 80.3
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 3.3e-152 542.0 337 78.0
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.3e-152 541.6 337 78.0
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.3e-151 540.0 337 78.6
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.8e-151 538.9 337 79.2
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 4.8e-151 538.1 337 77.4
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 4.8e-151 538.1 337 77.7
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.4e-150 536.6 337 78.0
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.8e-150 536.2 337 78.0
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.8e-150 536.2 337 78.0
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 2.4e-150 535.8 337 77.4
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.1e-150 535.4 337 76.9
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 9.1e-150 533.9 337 78.6
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-149 533.5 337 76.3
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.2e-149 533.5 337 75.4
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.2e-149 533.5 331 78.5
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 2.0e-149 532.7 337 76.9
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.0e-149 532.7 337 76.3
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 2.6e-149 532.3 337 76.3
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 4.5e-149 531.6 339 77.0
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.7e-148 529.6 337 74.8
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.5e-147 525.8 337 74.2
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 7.2e-147 524.2 336 75.0
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.6e-146 523.1 329 76.6
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 4.7e-146 521.5 337 73.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.4e-145 520.0 337 75.7
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 3.0e-145 518.8 336 75.3
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 5.1e-145 518.1 337 73.9
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 5.1e-145 518.1 337 73.9
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.1e-144 516.9 346 74.0
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.6e-144 515.8 335 75.8
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 5.7e-144 514.6 337 75.1
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 2.2e-143 512.7 332 75.3
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 3.7e-143 511.9 337 74.2
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.8e-143 511.5 337 73.3
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 6.3e-143 511.1 337 72.1
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 8.2e-143 510.8 337 73.9
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 8.2e-143 510.8 337 73.0
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.1e-142 510.4 337 73.3
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-142 510.0 333 73.9
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 3.1e-142 508.8 337 74.5
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 4.1e-142 508.4 335 74.3
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 1.5e-141 506.5 334 73.7
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 2.6e-141 505.8 337 70.9
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.3e-140 503.4 328 74.1
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 2.9e-140 502.3 334 73.4
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 5.0e-140 501.5 337 73.3
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 5.0e-140 501.5 335 71.0
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 2.5e-139 499.2 337 72.1
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 4.2e-139 498.4 338 73.1
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 9.4e-139 497.3 338 73.1
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.7e-138 495.7 340 72.9
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 4.7e-138 495.0 339 68.7
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.8e-137 493.0 345 71.9
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.3e-137 492.7 338 71.9
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.3e-137 492.7 341 70.7
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 5.2e-137 491.5 334 70.7
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 6.7e-137 491.1 330 73.3
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 8.8e-137 490.7 331 70.1
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-136 490.3 337 71.2
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 3.3e-136 488.8 330 71.8
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.7e-135 485.3 337 69.4
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 3.7e-135 485.3 330 73.3
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 4.1e-134 481.9 337 70.0
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 7.0e-134 481.1 311 73.0
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 9.1e-134 480.7 338 70.1
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 8.5e-132 474.2 337 70.3
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 1.1e-131 473.8 334 70.4
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.5e-131 473.4 334 68.9
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 4.2e-131 471.9 330 69.1
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 9.4e-131 470.7 331 69.2
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.2e-130 470.3 338 69.5
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 5.2e-129 464.9 335 68.7
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 5.2e-129 464.9 333 68.5
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 5.2e-129 464.9 337 70.3
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.2e-128 463.8 335 71.0
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 4.4e-128 461.8 337 67.1
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.4e-126 456.8 335 67.2
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.1e-126 455.7 329 67.8
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 2.7e-125 452.6 331 65.3
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 8.5e-124 447.6 328 65.5
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 2.5e-123 446.0 328 64.0
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.0e-121 439.1 338 63.6
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 5.7e-120 434.9 377 59.2
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 9.8e-120 434.1 289 72.3
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.3e-119 433.7 328 64.0
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.3e-119 433.7 289 74.0
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 4.9e-119 431.8 328 63.7
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.4e-118 430.3 337 61.7
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.8e-118 429.9 337 62.0
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.7e-116 423.3 323 66.9
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.3e-115 419.1 334 64.7
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 3.3e-115 419.1 320 64.4
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 6.1e-114 414.8 330 61.2
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 2.3e-113 412.9 329 61.4
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.6e-112 409.5 261 75.5
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 4.4e-112 408.7 330 60.9
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 3.7e-111 405.6 332 60.5
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 7.0e-110 401.4 317 61.5
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.6e-109 400.2 255 72.9
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.2e-95 353.2 337 52.5
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 7.1e-94 348.2 385 49.4
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.6e-93 347.1 349 53.3
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 5.6e-91 338.6 337 53.7
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 4.7e-90 335.5 217 77.9
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 4.0e-89 332.4 345 53.3
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 3.9e-84 315.8 315 54.9
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.6e-84 315.1 209 75.6
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 3.3e-83 312.8 279 57.0
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.2e-82 310.8 276 57.2
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.1e-77 293.5 192 70.8
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 6.0e-77 292.0 406 43.6
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.6e-72 276.6 250 58.8
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.0e-60 238.0 185 58.9
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.4e-57 227.6 155 71.0
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 3.1e-57 226.5 183 60.1
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.5e-51 207.6 378 36.2
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 2.9e-47 193.4 248 46.4
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 3.5e-45 186.4 143 60.1
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 4.6e-45 186.0 152 62.5
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 3.0e-44 183.3 339 38.9
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 3.7e-42 176.4 134 62.7
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 9.0e-41 171.8 135 63.7
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 9.0e-41 171.8 135 63.7
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 7.2e-30 135.6 93 68.8
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 1.2e-29 134.8 152 48.7
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 3.6e-29 133.3 89 71.9
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 9.7e-27 125.2 109 62.4
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 2.9e-23 113.6 408 27.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 4.1e-17 93.2 76 56.6
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 2.0e-16 90.9 67 65.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 4.2e-14 83.2 67 62.7
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.7e-10 70.1 39 84.6
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 6.3e-10 69.3 59 61.0
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.1e-09 68.6 57 66.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.4e-09 68.2 67 49.3
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 8.5e-07 58.9 34 76.5


User provided reference genes

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