Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 5.0e-160 567.8 296 100.0
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 9.6e-95 350.9 272 72.4
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.5e-81 305.8 273 60.4
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.1e-77 294.3 265 62.6
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 6.9e-77 291.6 279 60.9
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 9.9e-76 287.7 273 60.1
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.3e-75 287.3 278 59.4
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 2.2e-75 286.6 273 60.1
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 4.9e-75 285.4 169 83.4
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 2.4e-74 283.1 273 59.3
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 7.1e-74 281.6 264 59.8
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.2e-73 280.8 266 60.5
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.1e-73 280.0 283 57.6
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 2.7e-73 279.6 280 57.5
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 7.9e-73 278.1 266 60.9
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.3e-72 277.3 276 59.4
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 2.3e-72 276.6 196 73.5
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 3.0e-72 276.2 182 76.4
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 3.0e-72 276.2 274 57.7
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 3.9e-72 275.8 272 56.6
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 5.1e-72 275.4 272 57.0
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 5.1e-72 275.4 232 63.4
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 8.7e-72 274.6 271 58.3
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 1.1e-71 274.2 276 56.9
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 1.1e-71 274.2 274 55.8
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.1e-71 274.2 247 62.3
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 1.9e-71 273.5 275 57.8
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 3.3e-71 272.7 262 59.9
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 3.3e-71 272.7 272 56.2
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.3e-71 272.7 264 58.7
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 3.3e-71 272.7 179 75.4
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 3.3e-71 272.7 277 54.9
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 4.3e-71 272.3 276 59.1
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 4.3e-71 272.3 280 57.1
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 7.4e-71 271.6 272 56.6
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 3.7e-70 269.2 275 55.6
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 4.8e-70 268.9 272 55.9
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 6.2e-70 268.5 278 55.8
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 6.2e-70 268.5 185 71.9
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 8.1e-70 268.1 229 62.4
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 1.1e-69 267.7 275 56.4
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.4e-69 267.3 273 54.6
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.4e-69 267.3 229 62.4
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.8e-69 266.9 266 58.6
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 1.8e-69 266.9 229 62.4
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.8e-69 266.9 229 62.4
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.8e-69 266.9 177 71.8
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.4e-69 266.5 262 56.1
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 3.1e-69 266.2 273 54.6
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 3.1e-69 266.2 272 56.6
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 4.0e-69 265.8 278 55.8
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 4.0e-69 265.8 177 70.6
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 6.9e-69 265.0 272 55.1
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 6.9e-69 265.0 273 54.6
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 9.0e-69 264.6 265 57.0
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.2e-68 264.2 276 54.7
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.5e-68 263.8 172 74.4
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.5e-68 263.8 214 65.4
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 2.0e-68 263.5 266 57.5
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.0e-68 263.5 277 56.3
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 2.6e-68 263.1 175 74.3
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 2.6e-68 263.1 278 56.8
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 2.6e-68 263.1 274 55.1
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 3.4e-68 262.7 274 54.7
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 3.4e-68 262.7 278 55.4
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 1.0e-67 261.2 191 69.6
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 1.0e-67 261.2 191 69.6
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 1.0e-67 261.2 265 56.6
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.0e-67 261.2 272 54.4
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 2.2e-67 260.0 274 54.7
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 2.9e-67 259.6 262 55.0
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 2.9e-67 259.6 162 75.9
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 4.9e-67 258.8 175 71.4
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 4.9e-67 258.8 272 54.0
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 4.9e-67 258.8 262 55.7
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 6.5e-67 258.5 273 53.5
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 8.4e-67 258.1 272 52.9
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 8.4e-67 258.1 272 54.4
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 1.1e-66 257.7 162 75.3
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.9e-66 256.9 278 53.2
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 3.2e-66 256.1 276 54.7
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 4.2e-66 255.8 149 81.2
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 4.2e-66 255.8 277 52.7
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 4.2e-66 255.8 273 53.5
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 5.5e-66 255.4 190 65.8
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 9.3e-66 254.6 172 72.1
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.2e-65 254.2 272 53.3
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.2e-65 254.2 266 55.6
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.2e-65 254.2 265 55.5
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 2.1e-65 253.4 267 57.3
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 2.7e-65 253.1 174 70.7
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 2.7e-65 253.1 174 70.1
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.3e-64 250.8 283 53.7
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.3e-64 250.8 218 59.2
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 3.0e-64 249.6 283 54.1
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 3.0e-64 249.6 271 52.8
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 3.9e-64 249.2 170 71.2
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 5.1e-64 248.8 267 56.2
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 5.1e-64 248.8 261 56.7
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 5.1e-64 248.8 220 56.8
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 6.7e-64 248.4 280 52.9
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 8.7e-64 248.1 194 64.9
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.5e-63 247.3 181 63.5
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 7.4e-63 245.0 229 59.4
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 9.6e-63 244.6 189 66.1
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 9.6e-63 244.6 183 66.7
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.3e-62 244.2 280 51.8
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 1.2e-60 237.7 179 67.0
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.2e-60 237.7 290 49.7
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.4e-58 230.7 279 51.6
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 1.4e-58 230.7 166 66.9
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.2e-57 227.6 155 71.6
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 2.3e-56 223.4 263 50.6
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 9.7e-55 218.0 184 54.3
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 3.7e-54 216.1 192 54.2
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 5.9e-52 208.8 173 59.0
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 2.2e-51 206.8 208 52.4
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.0e-47 193.7 120 75.8
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 3.8e-43 179.5 289 43.9
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 4.2e-42 176.0 164 53.7
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.2e-42 176.0 106 81.1
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 9.4e-42 174.9 160 53.1
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 1.8e-40 170.6 206 49.5
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-34 151.4 136 60.3
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 8.8e-32 141.7 125 56.0
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 2.8e-30 136.7 120 56.7
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.4e-29 134.4 153 57.5
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 3.2e-26 123.2 188 37.8
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 2.3e-19 100.5 112 40.2
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.9e-19 100.1 57 75.4
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 2.5e-18 97.1 73 61.6
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 4.2e-18 96.3 67 64.2
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 2.3e-16 90.5 176 31.2
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 8.8e-16 88.6 109 43.1
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.8e-13 80.9 153 37.9
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 5.9e-12 75.9 52 63.5
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.3e-11 73.9 172 39.5
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 4.7e-09 66.2 73 52.1
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 3.0e-08 63.5 31 83.9
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 1.2e-07 61.6 79 44.3
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 5.7e-07 59.3 36 72.2
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 2.2e-06 57.4 28 82.1
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 2.2e-06 57.4 60 53.3


User provided reference genes

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