Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 0.0e+00 1411.7 729 100.0
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 2.4e-309 1065.1 729 73.1
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.2e-302 1042.0 730 70.7
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.9e-302 1040.8 726 70.1
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 8.7e-299 1030.0 744 69.6
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 4.3e-298 1027.7 711 71.2
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 7.4e-298 1026.9 730 69.2
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 2.7e-292 1008.4 725 68.4
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 7.9e-292 1006.9 733 67.9
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 1.8e-291 1005.7 730 68.2
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 8.7e-291 1003.4 730 68.1
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 4.3e-290 1001.1 727 67.4
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 2.4e-288 995.3 739 68.1
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.0e-286 989.9 733 67.1
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 8.5e-286 986.9 732 67.1
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 2.5e-285 985.3 729 66.7
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.6e-284 982.6 733 68.1
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.1e-284 982.2 735 65.7
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 2.1e-284 982.2 730 67.3
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 3.6e-284 981.5 730 65.5
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.6e-284 981.5 730 66.6
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 6.1e-284 980.7 738 65.9
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 6.1e-284 980.7 731 66.6
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 7.9e-284 980.3 730 66.6
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 5.1e-283 977.6 730 66.2
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 6.7e-283 977.2 732 66.4
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 9.7e-282 973.4 738 65.6
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 2.8e-281 971.8 769 63.2
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 4.8e-281 971.1 729 65.4
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 8.2e-281 970.3 730 65.8
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 1.1e-280 969.9 729 65.6
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 2.4e-280 968.8 729 65.6
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 5.3e-280 967.6 727 67.8
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 7.7e-279 963.8 765 62.6
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.9e-277 959.1 727 64.5
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 7.2e-277 957.2 730 64.2
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.7e-276 955.3 729 64.1
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.4e-275 953.0 726 64.9
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 2.3e-275 952.2 728 63.5
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.5e-274 949.5 727 63.3
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 2.0e-274 949.1 728 64.0
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 4.4e-274 948.0 733 63.6
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 7.4e-274 947.2 729 62.7
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 3.1e-272 941.8 728 64.0
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 4.1e-272 941.4 727 64.0
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 5.3e-272 941.0 728 63.3
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 7.0e-272 940.6 730 64.8
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.3e-270 936.4 734 64.0
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 1.1e-269 933.3 730 63.4
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 3.2e-269 931.8 735 64.1
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 9.4e-269 930.2 726 63.2
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.6e-268 929.5 730 63.4
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.7e-268 927.9 731 63.1
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 4.7e-268 927.9 729 63.9
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 1.0e-267 926.8 728 62.0
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.8e-267 926.0 729 64.1
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.8e-267 926.0 740 62.2
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 2.3e-267 925.6 728 62.1
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 3.0e-267 925.2 727 62.6
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 5.2e-267 924.5 726 63.4
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 5.2e-267 924.5 791 60.2
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 6.7e-267 924.1 731 62.8
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.1e-266 923.3 731 62.9
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 4.8e-265 917.9 727 62.2
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.4e-264 916.4 729 61.3
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 2.6e-263 912.1 727 63.8
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 7.7e-263 910.6 454 99.1
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 4.2e-261 904.8 727 61.5
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.1e-256 888.3 721 61.6
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 1.5e-253 879.8 674 63.9
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 2.1e-252 875.9 707 64.1
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 6.3e-249 864.4 708 60.9
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 3.1e-248 862.1 656 64.3
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 3.4e-242 842.0 725 60.0
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.2e-239 833.6 751 56.9
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 5.9e-239 831.2 607 65.2
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 6.6e-238 827.8 707 57.9
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 1.4e-235 820.1 605 65.3
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 8.3e-233 810.8 730 54.8
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 3.2e-232 808.9 727 56.7
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 1.6e-231 806.6 607 62.9
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.0e-231 806.2 673 61.2
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.7e-230 803.1 728 56.0
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 2.9e-225 785.8 732 56.0
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 5.4e-224 781.6 623 63.9
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.7e-220 768.5 602 63.0
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 4.0e-219 765.4 822 52.6
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.9e-217 759.2 764 54.2
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.9e-214 748.8 620 61.6
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.5e-213 746.9 500 71.2
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 5.4e-208 728.4 635 57.6
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.3e-203 711.8 495 69.5
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.2e-201 706.4 622 56.8
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.0e-198 697.6 729 51.4
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.6e-188 663.7 456 69.7
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 8.1e-188 661.4 730 50.1
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.0e-186 656.8 522 63.4
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 2.7e-167 593.2 739 45.2
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 1.4e-163 580.9 743 45.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 1.2e-154 551.2 418 66.3
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 7.7e-154 548.5 609 48.6
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.0e-134 483.0 582 43.6
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 2.6e-133 480.3 438 59.4
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 4.9e-132 476.1 628 45.2
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 9.2e-131 471.9 383 61.6
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 9.5e-120 435.3 346 63.0
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.6e-119 434.5 836 33.6
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.3e-113 414.8 225 87.6
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.6e-111 407.9 482 44.8
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 9.8e-109 398.7 542 40.8
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.6e-106 389.8 289 65.1
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.4e-99 366.3 469 43.3
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.1e-72 278.9 233 62.2
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.6e-69 267.7 144 91.0
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.5e-67 260.0 188 67.6
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 6.5e-60 236.5 667 28.6
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.9e-59 235.0 224 59.4
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 9.7e-56 222.6 125 73.6
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.3e-54 216.9 126 78.6
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.2e-53 215.7 316 40.8
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 4.2e-51 207.2 261 42.9
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.1e-49 200.3 126 75.4
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.1e-48 199.1 281 38.1
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 7.2e-35 153.3 104 70.2
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.6e-34 152.1 114 57.0
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.7e-34 151.4 169 50.3
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.7e-31 142.1 131 55.0
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.8e-31 141.4 105 65.7
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.6e-21 109.0 77 63.6
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 2.8e-15 88.2 66 57.6
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 7.0e-14 83.6 110 43.6
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 6.6e-12 77.0 61 54.1
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 3.6e-10 71.2 258 27.5
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 3.6e-10 71.2 60 56.7
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 3.6e-10 71.2 89 47.2
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 2.3e-09 68.6 44 68.2
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 5.2e-09 67.4 44 63.6
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 4.4e-08 64.3 52 57.7
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 1.7e-07 62.4 74 47.3
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 2.2e-07 62.0 48 60.4
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 4.1e-06 57.8 71 38.0
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 5.4e-06 57.4 48 56.2


User provided reference genes

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