Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.3e-87 326.2 152 100.0
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 5.0e-55 218.0 135 77.0
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 2.9e-39 165.6 137 59.9
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 1.9e-30 136.3 117 57.3
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 2.7e-29 132.5 118 50.0
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 3.0e-28 129.0 118 55.1
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 6.8e-28 127.9 115 53.0
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 6.8e-28 127.9 112 56.2
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 8.8e-28 127.5 138 49.3
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 2.6e-27 125.9 111 54.1
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.3e-26 123.6 111 50.5
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.8e-26 122.5 131 50.4
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 4.8e-26 121.7 110 51.8
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 4.8e-26 121.7 134 50.0
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 8.3e-26 120.9 135 45.9
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 1.1e-25 120.6 121 48.8
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.4e-25 120.2 110 52.7
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 3.1e-25 119.0 119 50.4
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 5.4e-25 118.2 123 50.4
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 5.4e-25 118.2 123 50.4
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 9.1e-25 117.5 123 50.4
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 9.1e-25 117.5 123 50.4
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 9.1e-25 117.5 113 49.6
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 9.1e-25 117.5 113 49.6
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.6e-24 116.7 113 48.7
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.6e-24 116.7 113 48.7
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 1.6e-24 116.7 118 51.7
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.6e-24 116.7 113 50.4
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.6e-24 116.7 125 46.4
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.7e-24 115.9 137 46.7
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 2.7e-24 115.9 125 45.6
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 3.5e-24 115.5 124 47.6
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 4.5e-24 115.2 110 53.6
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 4.5e-24 115.2 125 45.6
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 1.7e-23 113.2 125 46.4
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 2.2e-23 112.8 112 47.3
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 8.5e-23 110.9 135 40.7
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 1.1e-22 110.5 120 47.5
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 2.5e-22 109.4 110 50.0
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 7.2e-22 107.8 112 48.2
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 7.2e-22 107.8 123 43.9
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 1.2e-21 107.1 133 44.4
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 1.6e-21 106.7 112 46.4
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.6e-21 106.7 112 46.4
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.6e-21 106.7 112 46.4
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.6e-21 106.7 111 50.5
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 1.6e-21 106.7 169 38.5
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 1.6e-21 106.7 113 47.8
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.6e-21 106.7 90 54.4
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 2.1e-21 106.3 110 42.7
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.8e-21 105.9 112 49.1
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 4.7e-21 105.1 114 47.4
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 6.1e-21 104.8 116 46.6
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.8e-20 103.2 114 48.2
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 4.0e-20 102.1 113 46.0
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 5.2e-20 101.7 119 47.9
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 6.8e-20 101.3 123 42.3
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 6.8e-20 101.3 136 44.9
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 8.8e-20 100.9 118 43.2
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-19 100.5 124 42.7
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.5e-19 100.1 114 44.7
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 2.0e-19 99.8 120 45.0
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.0e-19 99.8 113 45.1
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 3.4e-19 99.0 119 47.1
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 5.7e-19 98.2 111 42.3
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 5.7e-19 98.2 120 47.5
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 5.7e-19 98.2 111 44.1
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 7.5e-19 97.8 114 46.5
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 9.8e-19 97.4 120 46.7
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 9.8e-19 97.4 120 47.5
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 1.3e-18 97.1 113 44.2
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-18 97.1 120 46.7
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 1.3e-18 97.1 113 42.5
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 2.2e-18 96.3 126 40.5
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 2.2e-18 96.3 120 41.7
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 2.8e-18 95.9 120 44.2
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.9e-18 95.1 120 40.8
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.9e-18 95.1 120 40.8
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 4.9e-18 95.1 126 39.7
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 4.9e-18 95.1 116 47.4
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 6.3e-18 94.7 114 43.0
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 8.3e-18 94.4 110 43.6
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 8.3e-18 94.4 120 45.0
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 1.1e-17 94.0 102 45.1
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 1.8e-17 93.2 110 43.6
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 3.1e-17 92.4 114 41.2
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 5.4e-17 91.7 117 46.2
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 5.4e-17 91.7 110 42.7
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 7.0e-17 91.3 92 47.8
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 7.0e-17 91.3 111 42.3
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 9.2e-17 90.9 110 40.0
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 9.2e-17 90.9 137 36.5
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 9.2e-17 90.9 111 41.4
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 9.2e-17 90.9 122 38.5
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 9.2e-17 90.9 123 39.0
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 1.2e-16 90.5 138 37.7
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-16 90.5 121 37.2
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-16 90.5 138 39.9
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-16 90.5 138 39.9
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.2e-16 90.5 110 41.8
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 1.6e-16 90.1 120 43.3
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 2.0e-16 89.7 117 40.2
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 3.5e-16 89.0 113 40.7
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 3.5e-16 89.0 91 45.1
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 3.5e-16 89.0 111 42.3
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.5e-16 88.6 121 38.8
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 4.5e-16 88.6 106 44.3
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 5.9e-16 88.2 123 39.8
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 5.9e-16 88.2 137 35.8
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 7.8e-16 87.8 110 40.9
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 7.8e-16 87.8 113 39.8
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.8e-16 87.8 113 39.8
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 1.0e-15 87.4 92 45.7
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.3e-15 87.0 137 35.8
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 1.7e-15 86.7 110 40.0
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.7e-15 86.7 101 47.5
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 2.3e-15 86.3 126 39.7
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 2.3e-15 86.3 117 40.2
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 2.3e-15 86.3 110 40.0
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.3e-15 86.3 121 38.0
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 2.9e-15 85.9 110 40.0
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 2.9e-15 85.9 113 45.1
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 5.0e-15 85.1 121 43.0
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.6e-15 84.7 114 38.6
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 6.6e-15 84.7 92 45.7
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 1.1e-14 84.0 110 40.0
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 1.5e-14 83.6 95 48.4
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.9e-14 83.2 109 42.2
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 5.6e-14 81.6 125 38.4
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 7.3e-14 81.3 110 40.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.2e-13 80.5 106 42.5
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.6e-13 80.1 114 32.5
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.6e-13 80.1 114 32.5
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 1.6e-13 80.1 97 40.2
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 2.1e-13 79.7 111 41.4
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 2.1e-13 79.7 111 37.8
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.1e-13 79.7 112 39.3
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 2.8e-13 79.3 120 38.3
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.8e-13 79.3 114 32.5
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.6e-13 79.0 120 37.5
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 4.7e-13 78.6 122 35.2
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.3e-12 76.3 156 30.8
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 8.9e-12 74.3 104 34.6
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 5.7e-11 71.6 105 39.0
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 5.7e-11 71.6 105 40.0
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 1.7e-10 70.1 60 58.3
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 2.4e-09 66.2 62 51.6
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 9.2e-09 64.3 120 30.0
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 1.3e-07 60.5 137 29.2
Mapoly0072s0063 Marchantia polymorpha HOM05D040683 ORTHO05D003587 2.3e-07 59.7 141 27.7
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 3.9e-07 58.9 101 35.6
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.9e-06 56.6 56 48.2
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 2.5e-06 56.2 63 38.1
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 4.3e-06 55.5 118 31.4
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 9.5e-06 54.3 64 39.1


User provided reference genes

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