Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.1e-165 586.6 303 100.0
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.0e-136 488.8 301 84.7
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.6e-129 466.5 300 82.0
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 2.6e-127 459.1 303 79.9
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.6e-127 459.1 301 80.4
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 3.3e-127 458.8 301 79.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.2e-126 456.1 301 79.7
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.8e-126 455.7 301 79.7
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 4.8e-126 454.9 301 79.4
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 8.2e-126 454.1 303 80.5
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 6.9e-125 451.1 300 80.0
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 8.5e-123 444.1 301 79.1
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.9e-122 443.0 301 79.1
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 5.5e-122 441.4 301 78.1
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 5.5e-122 441.4 300 77.7
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.5e-122 441.4 303 79.2
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 7.2e-122 441.0 301 77.4
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 9.4e-122 440.7 310 75.8
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.6e-121 439.9 301 77.7
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 4.7e-121 438.3 301 78.1
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 4.7e-121 438.3 301 77.4
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.0e-120 435.6 302 77.5
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 5.2e-120 434.9 298 76.8
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.3e-119 432.2 302 76.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.3e-119 432.2 302 76.8
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.4e-119 431.8 300 77.0
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 5.7e-119 431.4 302 78.1
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.7e-118 429.9 299 76.9
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-118 429.9 299 76.9
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 2.8e-118 429.1 304 76.3
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.8e-118 429.1 301 75.4
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.7e-118 428.7 298 76.8
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-117 426.8 311 74.3
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.4e-117 426.8 298 77.2
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.4e-117 426.0 299 76.3
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.4e-117 426.0 298 77.5
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 5.3e-117 424.9 299 75.9
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 9.1e-117 424.1 302 75.5
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.5e-116 422.2 302 75.2
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 2.2e-115 419.5 303 75.6
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.8e-115 418.7 302 75.5
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 5.0e-115 418.3 302 73.8
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 5.0e-115 418.3 298 75.2
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 8.5e-115 417.5 298 74.8
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 8.5e-115 417.5 304 75.0
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-114 417.2 298 73.8
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.5e-114 416.0 300 75.3
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.5e-114 416.0 298 74.5
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.5e-114 416.0 299 74.9
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 5.5e-114 414.8 298 73.5
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 8.0e-113 411.0 301 73.8
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 8.0e-113 411.0 300 75.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 5.2e-112 408.3 302 74.8
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.8e-112 407.5 300 74.0
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.5e-111 406.8 304 73.0
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 3.3e-111 405.6 299 73.9
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.7e-111 404.8 300 72.7
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 9.7e-111 404.1 277 78.3
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 2.2e-110 402.9 302 71.5
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.7e-110 402.1 302 72.5
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 4.8e-110 401.7 295 72.2
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.8e-109 399.8 302 72.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 5.3e-109 398.3 302 72.2
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 7.0e-109 397.9 351 66.7
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 9.1e-109 397.5 302 72.2
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.2e-108 397.1 302 72.2
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.6e-108 396.7 303 70.6
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 2.7e-108 396.0 304 72.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 3.5e-108 395.6 308 72.7
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 4.5e-108 395.2 303 71.0
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 5.9e-108 394.8 300 72.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 6.5e-107 391.3 278 75.2
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.2e-106 389.0 303 70.6
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 3.2e-106 389.0 265 77.4
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 4.2e-106 388.7 319 68.3
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 7.2e-106 387.9 266 76.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 9.4e-106 387.5 297 70.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.6e-105 386.7 303 69.3
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.7e-105 386.0 317 67.5
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.7e-105 385.2 302 69.9
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-104 383.6 303 69.3
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.4e-104 383.6 303 70.0
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.4e-104 383.6 294 73.5
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 3.0e-104 382.5 278 74.5
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 4.0e-104 382.1 273 75.5
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.0e-103 379.8 303 68.0
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.4e-103 379.0 291 71.1
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 9.8e-103 377.5 300 70.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-102 376.3 298 68.8
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.8e-102 375.9 301 68.1
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.8e-102 375.9 300 69.0
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.8e-102 375.2 283 72.4
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 8.3e-102 374.4 298 68.5
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.1e-101 374.0 277 72.9
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 5.4e-101 371.7 291 70.8
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-100 370.5 257 76.7
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.7e-100 369.4 267 75.7
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.7e-99 366.7 302 66.9
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.9e-99 365.9 304 67.8
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 3.8e-99 365.5 292 70.2
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.2e-98 362.5 257 76.7
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 7.2e-98 361.3 300 66.3
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 9.5e-98 360.9 255 76.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 9.5e-98 360.9 247 78.1
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 4.7e-97 358.6 247 76.1
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 8.0e-97 357.8 247 76.1
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 2.3e-96 356.3 247 76.5
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.0e-96 355.9 276 69.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.5e-95 353.6 305 65.2
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.1e-93 345.9 320 62.2
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 5.4e-93 345.1 247 73.7
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 5.4e-93 345.1 218 81.7
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 9.2e-93 344.4 248 74.2
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 4.5e-92 342.0 287 67.6
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.9e-90 336.7 247 74.9
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.9e-90 336.7 255 70.2
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 4.3e-90 335.5 282 66.7
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.6e-90 335.1 295 63.1
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-88 330.5 303 62.4
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-83 313.5 303 60.4
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 8.0e-81 304.7 216 75.9
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.1e-80 304.3 227 74.4
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-78 297.0 182 85.2
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 4.1e-77 292.4 301 59.8
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 3.6e-73 279.3 307 52.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 8.1e-73 278.1 248 64.1
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.8e-72 276.9 240 66.7
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.5e-71 273.9 182 79.1
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 3.4e-71 272.7 220 71.4
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.3e-70 270.8 262 59.9
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.7e-70 269.2 321 49.2
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 8.3e-70 268.1 307 50.5
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.3e-66 255.8 234 60.7
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.7e-65 252.3 255 58.4
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 6.2e-65 251.9 270 53.3
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.4e-64 250.8 182 69.8
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 6.8e-64 248.4 180 69.4
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 8.9e-64 248.1 281 55.9
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.8e-63 245.4 229 59.4
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.1e-60 236.9 166 77.1
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.6e-57 226.1 141 81.6
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 4.0e-56 222.6 257 55.6
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.7e-51 204.9 204 59.8
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.4e-48 197.6 176 65.3
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 4.0e-48 196.1 149 70.5
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.9e-44 181.8 158 65.2
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.6e-41 174.1 214 43.5
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 6.4e-38 162.2 122 73.0
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-35 154.5 106 75.5
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 8.4e-30 135.2 81 81.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.1e-29 134.8 78 85.9
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.2e-21 106.3 95 64.2
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-20 104.8 65 81.5
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.8e-17 92.8 113 53.1
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 5.3e-16 89.4 68 72.1
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.3e-14 84.7 68 66.2
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 8.5e-14 82.0 87 55.2
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.9e-13 80.9 51 78.4
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.8e-11 74.3 55 70.9


User provided reference genes

Program Settings