Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 5.2e-184 647.5 312 100.0
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 6.5e-126 454.5 298 74.5
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 1.1e-125 453.8 284 79.6
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 1.1e-125 453.8 292 76.7
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 2.5e-125 452.6 292 77.1
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 7.2e-125 451.1 287 77.0
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.2e-124 450.3 292 76.7
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 2.1e-124 449.5 301 73.8
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 3.0e-123 445.7 297 75.8
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 3.0e-123 445.7 297 75.8
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 1.9e-122 443.0 306 72.5
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.3e-122 441.8 305 72.1
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 9.7e-122 440.7 303 70.6
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 6.3e-121 438.0 303 71.0
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 2.4e-120 436.0 287 74.2
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 4.1e-120 435.3 292 74.7
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 2.0e-119 433.0 305 71.5
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.5e-119 431.8 308 71.1
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.5e-119 431.8 289 73.0
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.1e-117 427.2 287 72.5
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.1e-117 427.2 286 73.4
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 2.5e-117 426.0 286 73.4
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 4.2e-117 425.2 243 83.1
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.2e-116 423.7 283 70.3
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.8e-115 419.9 276 73.6
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.8e-115 419.9 276 72.8
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 2.3e-115 419.5 292 69.2
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 2.3e-115 419.5 286 71.0
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 3.9e-115 418.7 286 71.7
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 6.7e-115 417.9 243 80.7
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.1e-114 417.2 268 75.7
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 1.5e-114 416.8 267 73.8
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 2.6e-114 416.0 270 74.4
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 5.7e-114 414.8 272 73.2
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 9.7e-114 414.1 302 68.9
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 2.8e-113 412.5 283 73.5
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 3.7e-113 412.1 299 67.6
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 8.2e-113 411.0 284 69.7
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.4e-112 409.5 294 67.3
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 7.7e-111 404.4 331 61.9
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 1.0e-110 404.1 284 68.7
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 5.0e-110 401.7 226 86.3
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 8.5e-110 401.0 293 67.2
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.9e-109 399.8 287 69.0
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 3.2e-109 399.1 218 88.1
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 7.2e-109 397.9 286 68.2
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.2e-108 397.1 291 68.7
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 7.9e-108 394.4 256 74.6
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 1.8e-107 393.3 261 74.3
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 1.8e-107 393.3 238 76.9
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 3.0e-107 392.5 262 72.5
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 1.1e-106 390.6 260 72.3
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 4.8e-105 385.2 295 69.5
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 8.2e-105 384.4 253 71.5
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 2.4e-104 382.9 281 65.5
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 5.3e-104 381.7 287 65.9
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 9.1e-104 380.9 268 72.0
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 1.6e-103 380.2 233 76.8
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 2.6e-103 379.4 292 63.4
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 3.5e-103 379.0 254 72.0
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.7e-102 376.7 233 76.4
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 5.0e-102 375.2 286 64.7
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 1.5e-101 373.6 283 67.1
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 1.9e-101 373.2 240 72.5
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 5.5e-101 371.7 229 74.2
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 2.7e-100 369.4 314 62.4
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 8.0e-100 367.9 259 68.3
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.0e-99 367.5 241 71.4
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.0e-99 367.5 241 71.8
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 1.0e-99 367.5 310 63.5
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.8e-99 366.7 236 72.9
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.8e-99 366.7 252 69.4
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 3.0e-99 365.9 250 69.2
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 8.8e-99 364.4 232 72.4
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 8.8e-99 364.4 243 70.0
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 8.8e-99 364.4 243 70.0
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 8.8e-99 364.4 243 70.0
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 8.8e-99 364.4 234 72.6
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.5e-98 363.6 222 76.1
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 4.4e-98 362.1 216 79.6
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 7.5e-98 361.3 257 66.9
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 2.2e-97 359.8 241 69.7
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.8e-97 358.6 229 72.1
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 4.1e-96 355.5 221 75.6
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 3.8e-94 349.0 238 71.4
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 6.1e-92 341.7 288 61.5
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 2.2e-89 333.2 285 59.6
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 6.3e-89 331.6 225 68.0
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 2.4e-88 329.7 193 79.3
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 3.1e-88 329.3 216 69.4
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 4.1e-88 328.9 266 63.5
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 3.5e-87 325.9 238 68.9
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 1.5e-85 320.5 266 61.7
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 8.0e-84 314.7 174 85.1
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 5.2e-83 312.0 186 79.6
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 6.3e-81 305.1 204 72.1
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 4.5e-79 298.9 218 62.8
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 7.8e-79 298.1 178 78.1
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 6.6e-78 295.0 175 78.9
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.2e-76 290.8 175 78.3
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.6e-71 273.9 173 75.1
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 5.4e-64 248.8 164 74.4
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 2.1e-52 210.3 221 45.7
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 3.6e-52 209.5 221 46.6
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.2e-52 208.8 174 61.5
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 8.1e-52 208.4 147 65.3
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.4e-51 207.6 150 68.0
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 3.1e-51 206.5 227 46.7
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.2e-50 204.5 131 77.1
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.4e-50 203.0 131 76.3
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 7.8e-47 191.8 224 47.8
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 3.0e-46 189.9 112 84.8
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 2.6e-42 176.8 221 43.0
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.7e-38 164.1 106 72.6
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 3.0e-38 163.3 97 79.4
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 3.0e-38 163.3 97 79.4
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 2.2e-33 147.1 106 71.7
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 6.0e-31 139.0 135 57.8
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 6.0e-31 139.0 135 57.8
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 5.8e-26 122.5 79 74.7
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 1.3e-25 121.3 156 48.7
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 2.3e-22 110.5 61 80.3
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.9e-19 99.0 56 83.9
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 8.4e-17 92.0 132 45.5
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 5.5e-16 89.4 50 84.0
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 2.1e-15 87.4 92 53.3
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 1.3e-14 84.7 134 44.8
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 8.7e-14 82.0 112 48.2
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 8.7e-14 82.0 112 48.2
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 1.0e-09 68.6 48 62.5
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 2.7e-07 60.5 36 80.6
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 7.9e-07 58.9 179 26.8
CANSAT25G1010 Cannabis sativa HOM05D000450 ORTHO05D000327 3.0e-06 57.0 185 27.6
Nn2g14265 Nelumbo nucifera HOM05D000450 ORTHO05D000327 3.9e-06 56.6 214 27.1
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 3.9e-06 56.6 35 74.3
FAN05G0193 Fragaria x ananassa HOM05D000450 ORTHO05D000327 5.1e-06 56.2 196 27.6
Peaxi162Scf00211g01733 Petunia axillaris HOM05D000450 ORTHO05D000327 6.7e-06 55.8 175 29.1


User provided reference genes

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