Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 8.9e-47 189.9 93 100.0
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.0e-34 147.5 93 77.4
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.1e-33 146.4 93 78.5
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.5e-33 145.2 93 77.4
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 7.3e-33 143.7 93 76.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.3e-33 143.7 93 76.3
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-32 142.9 93 76.3
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-32 142.9 93 76.3
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.6e-32 142.5 93 75.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.1e-32 142.1 93 74.2
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.1e-32 142.1 93 74.2
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.1e-32 142.1 93 75.3
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 2.1e-32 142.1 93 75.3
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 4.7e-32 141.0 93 75.3
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 4.7e-32 141.0 93 75.3
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 6.2e-32 140.6 93 74.2
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 8.1e-32 140.2 93 75.3
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 8.1e-32 140.2 93 74.2
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.1e-31 139.8 93 73.1
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.1e-31 139.8 93 73.1
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.1e-31 139.8 93 74.2
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.1e-31 139.8 93 74.2
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.1e-31 139.8 93 74.2
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 74.2
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 74.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 74.2
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.4e-31 139.4 93 73.1
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.8e-31 139.0 93 74.2
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.8e-31 139.0 93 73.1
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.8e-31 139.0 93 76.3
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.8e-31 139.0 93 74.2
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.8e-31 139.0 93 74.2
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.3e-31 138.7 93 74.2
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-31 138.7 93 73.1
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-31 138.7 93 73.1
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 2.3e-31 138.7 93 74.2
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.3e-31 138.7 93 74.2
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 73.1
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 73.1
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 72.0
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 72.0
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 74.2
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 72.0
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 72.0
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 73.1
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 73.1
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.1e-31 138.3 93 73.1
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 4.0e-31 137.9 93 73.1
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.0e-31 137.9 92 73.9
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 4.0e-31 137.9 93 74.2
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 4.0e-31 137.9 93 71.0
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.0e-31 137.9 93 73.1
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.0e-31 137.9 93 73.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 4.0e-31 137.9 93 72.0
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 5.2e-31 137.5 93 72.0
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 5.2e-31 137.5 93 73.1
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 5.2e-31 137.5 93 73.1
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 5.2e-31 137.5 93 73.1
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 5.2e-31 137.5 93 73.1
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 5.2e-31 137.5 93 73.1
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.2e-31 137.5 94 72.3
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 6.8e-31 137.1 93 72.0
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.8e-31 137.1 93 73.1
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 6.8e-31 137.1 93 72.0
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 6.8e-31 137.1 93 72.0
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 8.9e-31 136.7 93 73.1
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 8.9e-31 136.7 93 72.0
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 8.9e-31 136.7 93 72.0
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 8.9e-31 136.7 93 73.1
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 72.0
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 71.0
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 71.0
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 71.0
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 71.0
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 73.1
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 72.0
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 71.0
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 71.0
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.2e-30 136.3 93 72.0
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.5e-30 136.0 93 72.0
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.5e-30 136.0 93 71.0
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.5e-30 136.0 93 72.0
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.5e-30 136.0 93 72.0
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.5e-30 136.0 93 72.0
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.5e-30 136.0 94 73.4
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.5e-30 136.0 93 71.0
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.5e-30 136.0 93 72.0
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 2.0e-30 135.6 93 72.0
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 2.0e-30 135.6 93 72.0
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 2.0e-30 135.6 93 72.0
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.0e-30 135.6 93 72.0
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 2.0e-30 135.6 93 72.0
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 2.0e-30 135.6 93 72.0
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 2.0e-30 135.6 93 72.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.6e-30 135.2 93 72.0
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.6e-30 135.2 93 72.0
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.6e-30 135.2 93 71.0
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.6e-30 135.2 93 72.0
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 3.4e-30 134.8 93 71.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 3.4e-30 134.8 93 71.0
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.4e-30 134.8 92 71.7
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 4.4e-30 134.4 93 72.0
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 4.4e-30 134.4 93 71.0
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.4e-30 134.4 93 71.0
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.4e-30 134.4 93 71.0
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 4.4e-30 134.4 93 71.0
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.4e-30 134.4 93 72.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 4.4e-30 134.4 93 69.9
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.4e-30 134.4 93 71.0
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 5.8e-30 134.0 93 71.0
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 5.8e-30 134.0 93 72.0
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.8e-30 134.0 93 72.0
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.8e-30 134.0 93 71.0
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 7.5e-30 133.7 93 69.9
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 7.5e-30 133.7 93 71.0
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 7.5e-30 133.7 93 71.0
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 7.5e-30 133.7 93 69.9
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 9.8e-30 133.3 93 68.8
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 9.8e-30 133.3 93 69.9
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 9.8e-30 133.3 93 71.0
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-29 132.9 93 71.0
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-29 132.9 93 71.0
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.3e-29 132.9 93 68.8
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.3e-29 132.9 93 69.9
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.7e-29 132.5 93 71.0
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.7e-29 132.5 93 72.0
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.2e-29 132.1 92 70.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.9e-29 131.7 93 71.0
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 3.7e-29 131.3 93 69.9
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.7e-29 131.3 93 68.8
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 4.9e-29 131.0 93 69.9
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.9e-29 131.0 101 67.3
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.1e-28 129.8 93 71.0
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.1e-28 129.8 93 69.9
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 4.1e-28 127.9 117 59.8
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 5.4e-28 127.5 99 67.7
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-27 126.3 100 66.0
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.9e-26 121.3 124 54.0
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.1e-25 119.8 130 53.1
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 4.3e-25 117.9 74 77.0
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 5.6e-25 117.5 74 74.3
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.3e-23 112.1 146 46.6
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 3.1e-23 111.7 93 62.4
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 4.1e-20 101.3 92 52.2
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.1e-19 99.0 93 52.7
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.1e-19 99.0 92 53.3
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-16 88.6 96 49.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.4e-15 85.5 79 59.5
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.1e-15 85.1 64 68.8
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 6.4e-13 77.4 77 49.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.8e-07 59.3 30 83.3
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 2.0e-06 55.8 65 46.2
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 5.8e-06 54.3 86 32.6


User provided reference genes

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