Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.9e-105 386.0 208 100.0
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 2.4e-60 236.1 169 81.1
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 2.8e-56 222.6 182 74.7
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 2.3e-55 219.5 158 77.2
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 3.1e-55 219.2 151 80.8
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 4.4e-54 215.3 144 81.9
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 2.2e-53 213.0 155 78.1
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.9e-53 212.6 138 81.9
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 4.9e-53 211.8 162 73.5
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 4.9e-53 211.8 158 74.1
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 8.3e-53 211.1 152 75.0
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.1e-52 208.8 144 76.4
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 4.1e-52 208.8 154 72.7
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 9.2e-52 207.6 141 82.3
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.6e-51 206.8 158 75.9
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 3.5e-51 205.7 154 74.0
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 6.0e-51 204.9 148 75.0
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 6.0e-51 204.9 147 76.9
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 7.8e-51 204.5 164 67.7
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 1.0e-50 204.1 149 75.2
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 1.0e-50 204.1 168 70.8
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 1.3e-50 203.8 149 76.5
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.3e-50 203.8 149 76.5
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 1.3e-50 203.8 159 69.2
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 1.3e-50 203.8 159 69.2
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.7e-50 203.4 149 75.8
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 1.7e-50 203.4 159 68.6
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 2.3e-50 203.0 144 78.5
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 3.0e-50 202.6 171 66.1
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 3.9e-50 202.2 147 76.2
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 6.6e-50 201.4 149 75.2
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 8.6e-50 201.1 159 70.4
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 8.6e-50 201.1 168 64.9
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 1.1e-49 200.7 165 69.7
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 2.5e-49 199.5 149 75.8
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 4.3e-49 198.7 188 63.8
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 5.6e-49 198.4 168 64.3
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 7.3e-49 198.0 165 68.5
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 7.3e-49 198.0 158 70.3
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 9.5e-49 197.6 146 75.3
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 9.5e-49 197.6 167 69.5
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.6e-48 196.8 160 71.2
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.6e-48 196.8 160 71.2
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 2.1e-48 196.4 149 73.8
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 2.1e-48 196.4 157 72.6
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 2.1e-48 196.4 150 74.0
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 2.1e-48 196.4 163 69.3
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 3.6e-48 195.7 141 76.6
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 2.3e-47 193.0 144 72.2
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 2.3e-47 193.0 147 71.4
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 3.1e-47 192.6 155 71.6
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 3.1e-47 192.6 138 76.8
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 4.0e-47 192.2 145 73.1
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 1.5e-46 190.3 149 71.1
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.6e-46 189.5 163 67.5
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 4.4e-46 188.7 161 67.7
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 4.4e-46 188.7 162 69.8
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 7.5e-46 188.0 151 72.8
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 2.2e-45 186.4 160 68.8
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 4.9e-45 185.3 160 65.6
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.1e-44 184.1 150 70.7
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 1.1e-44 184.1 162 65.4
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.1e-44 184.1 160 65.6
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.9e-44 183.3 201 56.2
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.9e-44 183.3 169 66.3
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.1e-44 182.2 129 78.3
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.1e-44 182.2 138 73.9
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 5.4e-44 181.8 145 73.8
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 7.0e-44 181.4 156 67.9
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 1.6e-43 180.3 161 65.2
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 2.1e-43 179.9 150 71.3
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 2.1e-43 179.9 150 71.3
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 2.1e-43 179.9 150 71.3
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 2.1e-43 179.9 141 73.0
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 2.7e-43 179.5 140 70.7
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 2.7e-43 179.5 140 70.7
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 3.5e-43 179.1 176 63.1
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 6.0e-43 178.3 150 70.0
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 6.0e-43 178.3 151 70.2
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 6.0e-43 178.3 158 69.0
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 6.0e-43 178.3 161 64.0
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.3e-42 177.2 147 70.1
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.3e-42 177.2 147 70.1
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 1.7e-42 176.8 127 74.8
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 1.7e-42 176.8 169 63.3
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 1.7e-42 176.8 151 65.6
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 3.0e-42 176.0 135 73.3
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 3.9e-42 175.6 145 71.7
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 5.1e-42 175.3 142 72.5
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 6.6e-42 174.9 160 64.4
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 1.5e-41 173.7 161 64.6
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 1.9e-41 173.3 142 71.8
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 2.5e-41 172.9 150 69.3
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 2.5e-41 172.9 142 70.4
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 4.3e-41 172.2 133 73.7
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 7.3e-41 171.4 161 64.0
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 9.5e-41 171.0 115 80.0
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 2.1e-40 169.9 113 81.4
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.1e-40 169.9 115 79.1
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 2.8e-40 169.5 160 60.6
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 6.2e-40 168.3 161 63.4
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 1.1e-39 167.5 161 60.2
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 1.8e-39 166.8 164 62.2
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 4.0e-39 165.6 155 63.2
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 6.8e-39 164.9 142 68.3
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.5e-38 163.7 153 65.4
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 2.2e-37 159.8 121 71.1
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.1e-36 157.5 253 44.3
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 2.4e-36 156.4 170 55.9
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 5.2e-31 138.7 162 56.2
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 6.8e-31 138.3 127 61.4
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 3.8e-29 132.5 170 51.2
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 1.4e-28 130.6 173 49.7
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.9e-28 130.2 121 60.3
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 7.8e-27 124.8 165 50.9
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 3.0e-26 122.9 114 59.6
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 4.3e-25 119.0 329 33.7
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 2.1e-24 116.7 166 49.4
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 7.6e-22 108.2 127 57.5
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 9.9e-22 107.8 117 52.1
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 6.4e-21 105.1 71 69.0
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 5.6e-17 92.0 74 73.0
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 4.0e-15 85.9 78 57.7
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 5.3e-15 85.5 65 73.8
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 2.6e-14 83.2 108 49.1
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 3.8e-13 79.3 59 78.0
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 2.7e-11 73.2 91 47.3
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 1.0e-10 71.2 80 57.5
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.5e-09 67.4 53 73.6
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 1.3e-08 64.3 145 37.2
Solyc02g077770.3 Solanum lycopersicum HOM05D010982 ORTHO05D012922 8.1e-08 61.6 35 82.9
arahy.Tifrunner.gnm1.ann1.Y0FL4G Arachis hypogaea HOM05D010982 ORTHO05D012922 1.4e-07 60.8 35 77.1
Gohir.D10G028000 Gossypium hirsutum HOM05D010982 ORTHO05D012922 1.8e-07 60.5 35 77.1
Hma1.2p1_0558F.1_g178585 Hydrangea macrophylla HOM05D010982 ORTHO05D012922 1.8e-07 60.5 35 80.0
Thecc.06G182200 Theobroma cacao HOM05D010982 ORTHO05D012922 3.1e-07 59.7 35 77.1
Manes.17G048550 Manihot esculenta HOM05D010982 ORTHO05D012922 5.3e-07 58.9 34 76.5
vmacro03905 Vaccinium macrocarpon HOM05D010982 ORTHO05D012922 5.3e-07 58.9 36 75.0
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 1.2e-06 57.8 35 74.3
Manes.16G031000 Manihot esculenta HOM05D010982 ORTHO05D012922 1.5e-06 57.4 35 74.3
CiPaw.09G062800 Carya illinoinensis HOM05D010982 ORTHO05D012922 2.0e-06 57.0 35 71.4
SEGI_21705 Sequoiadendron giganteum HOM05D010982 ORTHO05D012922 2.6e-06 56.6 35 74.3
Potri.004G047866 Populus trichocarpa HOM05D010982 ORTHO05D012922 4.5e-06 55.8 35 77.1
FAN16G1463 Fragaria x ananassa HOM05D010982 ORTHO05D012922 9.9e-06 54.7 36 66.7
Glyma.15G077250 Glycine max HOM05D010982 ORTHO05D012922 9.9e-06 54.7 35 68.6


User provided reference genes

Program Settings