Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.4e-50 201.4 109 100.0
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.9e-33 145.2 107 71.0
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 7.2e-32 140.6 104 74.0
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.1e-31 139.0 107 71.0
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.1e-27 126.7 106 68.9
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 5.4e-27 124.4 108 63.0
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.1e-24 116.7 109 56.0
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.9e-24 115.9 109 58.7
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 3.3e-24 115.2 109 56.9
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 4.2e-24 114.8 109 56.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 7.2e-24 114.0 109 56.0
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 7.2e-24 114.0 105 60.0
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 9.5e-24 113.6 107 56.1
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.6e-23 112.8 107 57.9
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.8e-23 112.1 104 57.7
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.7e-23 111.3 106 52.8
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 6.1e-23 110.9 95 58.9
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 6.1e-23 110.9 95 58.9
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 6.1e-23 110.9 105 58.1
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 6.1e-23 110.9 109 54.1
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.0e-22 110.2 109 54.1
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.8e-22 109.4 107 54.2
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.2e-22 107.8 107 55.1
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.5e-21 106.3 106 52.8
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.5e-21 106.3 107 54.2
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.4e-21 105.1 99 59.6
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.4e-21 104.8 107 54.2
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 4.4e-21 104.8 105 54.3
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.7e-21 104.4 110 55.5
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 5.7e-21 104.4 99 58.6
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.7e-21 104.4 100 59.0
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 7.5e-21 104.0 90 58.9
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.3e-20 103.2 93 57.0
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-20 103.2 94 53.2
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.3e-20 103.2 94 60.6
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.3e-20 103.2 98 57.1
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.3e-20 103.2 103 58.3
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.3e-20 103.2 105 54.3
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.7e-20 102.8 100 53.0
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.2e-20 102.4 94 54.3
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.2e-20 102.4 93 55.9
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.2e-20 102.4 93 55.9
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.8e-20 102.1 109 52.3
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 3.7e-20 101.7 109 51.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 4.9e-20 101.3 106 54.7
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.1e-19 100.1 108 52.8
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.4e-19 99.8 98 58.2
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-19 99.8 106 48.1
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.8e-19 99.4 91 59.3
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.4e-19 99.0 101 55.4
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 5.4e-19 97.8 109 49.5
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 5.4e-19 97.8 109 51.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 9.2e-19 97.1 106 51.9
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.6e-18 96.3 77 64.9
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.6e-18 96.3 101 54.5
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.0e-18 95.9 95 53.7
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 2.0e-18 95.9 108 50.0
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 2.0e-18 95.9 108 50.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.0e-18 95.9 93 55.9
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.0e-18 95.9 103 55.3
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 3.5e-18 95.1 107 52.3
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 4.5e-18 94.7 114 50.0
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 4.5e-18 94.7 95 55.8
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 5.9e-18 94.4 107 47.7
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 7.8e-18 94.0 103 54.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.0e-17 93.6 100 56.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.3e-17 93.2 111 51.4
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 2.3e-17 92.4 119 50.4
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 2.9e-17 92.0 95 52.6
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 2.9e-17 92.0 110 50.9
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.0e-17 91.3 112 52.7
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.1e-16 90.1 96 51.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.1e-16 90.1 112 52.7
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.5e-16 89.7 92 54.3
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.5e-16 89.7 92 54.3
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.9e-16 89.4 94 53.2
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 3.3e-16 88.6 102 45.1
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.6e-16 87.8 89 56.2
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 7.3e-16 87.4 112 49.1
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 7.3e-16 87.4 97 55.7
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.2e-15 86.7 93 49.5
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.6e-15 86.3 112 50.0
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 2.1e-15 85.9 101 46.5
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 6.1e-15 84.3 106 45.3
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.1e-15 84.3 93 51.6
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 8.0e-15 84.0 107 45.8
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 8.0e-15 84.0 97 48.5
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 8.0e-15 84.0 109 47.7
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.4e-14 83.2 81 54.3
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-14 83.2 93 51.6
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 2.3e-14 82.4 102 50.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.3e-14 82.4 93 50.5
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 5.2e-14 81.3 110 47.3
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 6.8e-14 80.9 107 46.7
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.2e-13 80.1 92 51.1
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.2e-13 80.1 101 43.6
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.8e-13 77.8 91 51.6
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 7.5e-13 77.4 92 47.8
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.2e-12 75.9 92 47.8
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 3.7e-12 75.1 106 44.3
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.7e-12 75.1 81 54.3
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.1e-11 73.6 93 51.6
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.1e-11 73.6 97 44.3
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.4e-11 73.2 62 64.5
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.4e-11 73.2 62 64.5
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.2e-11 72.0 122 41.0
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.1e-11 71.6 113 41.6
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.1e-11 71.6 113 41.6
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 4.1e-11 71.6 110 42.7
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 5.4e-11 71.2 113 40.7
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 5.4e-11 71.2 113 40.7
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 5.4e-11 71.2 68 55.9
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.2e-10 70.1 113 38.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.6e-10 69.7 112 40.2
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.7e-10 68.9 113 40.7
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.7e-10 68.9 101 45.5
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 3.5e-10 68.6 116 39.7
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 4.6e-10 68.2 100 44.0
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 4.6e-10 68.2 67 53.7
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.3e-09 66.6 116 39.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 2.3e-09 65.9 119 39.5
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 2.3e-09 65.9 119 39.5
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 2.3e-09 65.9 119 39.5
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.0e-09 65.5 92 44.6
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 3.9e-09 65.1 103 41.7
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 3.9e-09 65.1 114 39.5
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 5.0e-09 64.7 119 40.3
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 5.0e-09 64.7 98 41.8
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 6.6e-09 64.3 82 47.6
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 8.6e-09 63.9 98 43.9
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 8.6e-09 63.9 98 40.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 8.6e-09 63.9 114 39.5
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 8.6e-09 63.9 98 40.8
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 8.6e-09 63.9 99 43.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 8.6e-09 63.9 98 44.9
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-08 63.5 98 39.8
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.9e-08 62.8 113 38.9
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.9e-08 62.8 113 38.9
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 5.6e-08 61.2 70 45.7
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 5.6e-08 61.2 98 42.9
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 5.6e-08 61.2 70 45.7
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 7.3e-08 60.8 75 48.0
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 7.3e-08 60.8 99 41.4
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 7.3e-08 60.8 119 38.7
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 7.3e-08 60.8 98 37.8
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 7.3e-08 60.8 98 38.8
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 7.3e-08 60.8 98 37.8
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 9.5e-08 60.5 74 43.2
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 9.5e-08 60.5 100 37.0
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 9.5e-08 60.5 100 37.0
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.1e-07 59.3 113 34.5
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.8e-07 58.9 75 41.3
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.8e-07 58.9 75 41.3
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.8e-07 58.9 75 41.3
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 3.6e-07 58.5 75 41.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 4.7e-07 58.2 70 51.4
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 6.2e-07 57.8 70 52.9
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 6.2e-07 57.8 79 44.3
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 6.2e-07 57.8 104 36.5
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 8.0e-07 57.4 78 47.4
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 1.1e-06 57.0 98 36.7
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.3e-06 55.8 75 42.7
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.3e-06 55.8 68 50.0


User provided reference genes

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