Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 1.9e-158 562.4 276 100.0
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 4.3e-113 411.8 280 71.4
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 5.8e-110 401.4 277 70.4
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 2.2e-109 399.4 281 69.8
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 8.3e-109 397.5 279 68.8
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 2.7e-107 392.5 279 68.1
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 8.6e-106 387.5 276 66.3
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.9e-105 386.3 276 66.7
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.5e-105 386.0 274 69.3
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.2e-104 383.6 276 65.9
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 2.1e-104 382.9 276 65.9
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 2.9e-101 372.5 276 66.7
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 8.3e-101 370.9 273 70.3
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 1.9e-100 369.8 273 64.5
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 2.4e-100 369.4 276 65.2
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.0e-100 367.9 285 64.9
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 4.6e-99 365.2 273 64.5
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 6.0e-99 364.8 281 65.5
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 6.0e-99 364.8 280 65.0
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 1.3e-98 363.6 285 63.2
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 6.6e-98 361.3 287 64.1
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 3.3e-97 359.0 274 63.9
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 3.3e-97 359.0 273 64.5
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 7.3e-97 357.8 274 63.9
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 4.7e-96 355.1 285 63.9
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 6.2e-96 354.8 279 64.2
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.1e-95 354.0 290 63.1
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 1.1e-95 354.0 280 60.7
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.4e-95 353.6 290 63.1
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.3e-95 352.8 286 64.0
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 2.3e-95 352.8 272 62.1
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.5e-94 350.1 288 62.5
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.6e-94 349.4 286 63.3
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 3.4e-94 349.0 273 63.4
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 7.5e-94 347.8 277 63.2
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 9.9e-94 347.4 278 61.5
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.3e-93 347.1 279 62.0
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 1.3e-93 347.1 278 61.9
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.7e-93 346.7 276 62.7
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.7e-93 345.5 276 62.3
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 2.4e-92 342.8 278 62.6
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 9.2e-92 340.9 276 60.9
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 9.2e-92 340.9 333 53.2
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 1.2e-91 340.5 276 62.3
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 1.2e-91 340.5 276 62.3
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 1.2e-91 340.5 273 60.8
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 2.1e-91 339.7 285 59.3
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 2.1e-91 339.7 272 61.0
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 2.7e-91 339.3 285 59.6
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 4.6e-91 338.6 282 58.2
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 6.0e-91 338.2 276 60.5
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 6.0e-91 338.2 279 59.1
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 7.8e-91 337.8 275 61.8
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 1.0e-90 337.4 276 61.2
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 1.7e-90 336.7 282 61.3
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 1.7e-90 336.7 275 59.3
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 2.3e-90 336.3 276 61.2
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.3e-90 336.3 276 62.0
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 2.3e-90 336.3 268 62.7
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 3.0e-90 335.9 276 60.9
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 5.1e-90 335.1 276 60.9
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 5.1e-90 335.1 280 58.9
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 8.6e-90 334.3 278 60.1
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 8.6e-90 334.3 278 59.7
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 1.1e-89 334.0 276 60.5
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.1e-89 334.0 276 59.1
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 3.3e-89 332.4 230 67.0
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 7.3e-89 331.3 272 58.5
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 7.3e-89 331.3 280 58.6
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 1.2e-88 330.5 303 56.1
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.6e-88 330.1 279 60.9
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 2.1e-88 329.7 276 59.4
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 2.8e-88 329.3 275 58.9
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 2.8e-88 329.3 276 59.4
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 3.6e-88 328.9 276 60.5
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 4.7e-88 328.6 276 59.4
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 4.7e-88 328.6 280 60.4
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 6.2e-88 328.2 276 59.8
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.1e-87 327.4 276 60.1
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 1.5e-86 323.6 281 56.2
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 1.5e-86 323.6 231 69.3
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 5.8e-86 321.6 279 57.0
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.7e-85 320.1 276 56.5
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.2e-85 319.7 211 74.4
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 4.9e-85 318.5 286 57.0
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-84 317.4 278 56.5
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 3.2e-84 315.8 274 57.3
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 3.2e-84 315.8 275 57.1
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 4.1e-84 315.5 271 55.7
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 9.2e-84 314.3 266 60.9
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.6e-83 313.5 295 54.9
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 2.1e-83 313.2 211 73.5
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.0e-82 310.8 273 56.4
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 5.1e-82 308.5 223 66.8
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 5.1e-82 308.5 277 57.4
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 8.7e-82 307.8 286 55.6
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 8.7e-82 307.8 276 56.9
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 3.3e-81 305.8 240 61.7
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 1.6e-80 303.5 295 53.2
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.8e-80 302.8 273 57.1
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 3.6e-80 302.4 299 55.2
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 5.2e-79 298.5 185 74.6
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 5.8e-78 295.0 232 61.2
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 5.8e-78 295.0 232 60.8
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 3.8e-77 292.4 274 54.4
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 6.4e-77 291.6 267 54.7
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-76 290.4 260 58.1
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 3.5e-75 285.8 281 50.5
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 4.6e-75 285.4 236 60.2
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 1.0e-74 284.3 248 57.7
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.3e-74 283.9 218 63.8
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 1.7e-74 283.5 193 68.9
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.7e-74 283.5 184 72.8
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 3.0e-74 282.7 259 55.6
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 5.1e-74 282.0 280 49.6
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 1.5e-73 280.4 283 53.4
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 1.9e-73 280.0 281 49.5
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 7.6e-70 268.1 198 62.1
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 8.4e-69 264.6 229 55.5
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 5.4e-68 261.9 192 67.7
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.1e-68 261.5 216 63.4
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 9.6e-65 251.1 230 54.3
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 6.2e-64 248.4 212 59.0
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.1e-59 233.4 161 70.2
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 1.9e-52 210.3 286 46.2
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 3.5e-51 206.1 286 45.8
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 5.7e-49 198.7 279 38.4
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 1.5e-46 190.7 246 41.9
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 5.1e-42 175.6 202 45.5
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.8e-42 174.9 116 69.8
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 1.7e-37 160.6 114 67.5
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 2.2e-37 160.2 118 66.1
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 2.1e-35 153.7 207 39.1
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.4e-34 151.0 273 34.4
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 1.5e-30 137.5 96 66.7
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.6e-30 136.7 96 67.7
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-25 121.3 83 65.1
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 1.4e-23 114.4 205 36.1
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 4.5e-22 109.4 109 54.1
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 6.5e-21 105.5 111 51.4
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 4.2e-20 102.8 120 43.3
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 7.2e-20 102.1 129 41.9
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 2.6e-17 93.6 203 28.1
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 4.4e-17 92.8 69 65.2
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 4.1e-15 86.3 100 46.0
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 3.5e-14 83.2 71 52.1
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 4.5e-14 82.8 279 29.4
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.8e-10 70.9 56 64.3
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 9.8e-09 65.1 44 68.2
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 9.8e-09 65.1 47 72.3
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 1.6e-06 57.8 108 29.6
Medtr8g023540 Medicago truncatula HOM05D004903 ORTHO05D005849 2.7e-06 57.0 60 46.7


User provided reference genes

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