Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.4e-308 1060.8 539 100.0
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 7.8e-220 767.3 542 72.5
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.1e-217 759.2 547 72.8
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 8.1e-217 757.3 544 72.8
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.0e-216 755.0 466 82.6
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 6.4e-214 747.7 551 71.9
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 3.2e-213 745.3 548 71.2
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 3.9e-211 738.4 466 77.7
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 6.6e-211 737.6 513 73.1
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 7.3e-210 734.2 436 82.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.4e-208 729.9 545 69.0
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 3.1e-208 728.8 542 69.9
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 4.0e-208 728.4 543 70.2
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 4.4e-207 724.9 549 68.5
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 5.8e-207 724.5 518 71.2
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 9.9e-207 723.8 535 69.9
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 9.9e-207 723.8 434 80.4
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.2e-206 722.6 540 69.1
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 2.9e-206 722.2 526 70.2
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.9e-206 722.2 527 71.0
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 8.4e-206 720.7 549 68.5
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.4e-205 719.9 511 71.0
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 5.4e-205 718.0 421 81.7
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 2.1e-204 716.1 509 72.7
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.7e-204 715.7 521 70.1
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 6.0e-204 714.5 549 67.2
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.7e-203 713.0 517 70.4
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 2.3e-203 712.6 541 68.4
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 6.6e-203 711.1 539 68.1
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.5e-202 709.9 539 68.3
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 4.3e-202 708.4 551 66.6
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 2.1e-201 706.1 542 68.5
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 2.1e-201 706.1 544 68.9
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 2.8e-201 705.7 508 72.0
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 5.2e-200 701.4 426 78.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.6e-199 699.1 421 80.5
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 4.4e-199 698.4 543 67.4
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 7.6e-199 697.6 554 67.0
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 9.9e-199 697.2 460 74.6
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 9.9e-199 697.2 463 75.2
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.7e-198 696.4 523 69.2
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.7e-198 696.4 422 80.3
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.8e-198 695.3 477 72.1
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 4.9e-198 694.9 534 67.4
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 6.4e-198 694.5 429 78.8
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 6.4e-198 694.5 427 77.8
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.4e-198 694.5 481 72.1
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 6.4e-198 694.5 432 78.2
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 8.4e-198 694.1 463 74.7
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.1e-197 693.7 553 66.4
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.1e-197 693.7 490 70.6
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.4e-197 693.3 529 66.9
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.9e-197 693.0 544 66.4
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.4e-197 692.6 477 71.9
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 3.2e-197 692.2 421 78.6
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 5.4e-197 691.4 481 71.1
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.0e-195 687.2 480 72.1
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.0e-195 687.2 475 73.3
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 3.9e-195 685.3 548 65.7
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.9e-195 685.3 429 77.4
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.1e-195 684.9 535 66.5
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 5.1e-195 684.9 475 73.1
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 6.6e-195 684.5 523 68.1
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.1e-194 683.7 421 76.7
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.9e-194 682.9 506 70.9
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.9e-194 682.9 485 71.8
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 4.3e-194 681.8 421 79.1
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 5.6e-194 681.4 521 67.6
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.3e-193 680.2 513 68.6
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 3.1e-192 675.6 510 70.2
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 7.6e-191 671.0 456 71.3
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 2.2e-190 669.5 482 69.5
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 3.8e-190 668.7 420 75.5
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 6.4e-190 667.9 431 76.1
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.2e-189 665.6 581 63.0
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.2e-189 665.2 494 68.2
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 9.3e-189 664.1 494 68.0
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 1.2e-188 663.7 580 61.7
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 2.1e-188 662.9 542 65.7
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 6.0e-188 661.4 483 68.9
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 6.0e-188 661.4 486 68.5
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 6.7e-187 657.9 499 68.5
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.1e-186 657.1 421 77.7
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.5e-186 656.0 421 77.7
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.5e-186 656.0 421 77.2
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.3e-186 655.6 431 74.0
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 9.6e-186 654.1 485 69.9
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.6e-185 653.3 422 75.1
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.6e-185 653.3 487 68.6
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.6e-185 653.3 487 68.6
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 2.8e-185 652.5 487 68.2
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.8e-185 652.5 487 68.2
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 3.7e-185 652.1 487 68.2
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 9.0e-184 647.5 431 74.5
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.2e-183 647.1 466 71.2
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.6e-183 644.4 432 75.2
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-182 643.3 504 65.7
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.7e-182 643.3 504 65.7
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.2e-182 642.9 488 67.6
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 2.2e-182 642.9 514 65.6
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.2e-182 642.9 421 77.2
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.9e-182 642.5 504 65.7
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.1e-181 640.6 489 67.3
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.1e-181 640.6 489 67.3
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.5e-178 629.4 427 72.1
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 4.0e-176 622.1 419 68.7
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 5.3e-176 621.7 423 73.8
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.5e-175 620.2 541 64.0
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 7.6e-175 617.8 512 65.8
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-173 613.6 577 58.4
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.1e-170 604.0 630 56.8
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.5e-170 603.6 515 64.9
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 4.3e-170 602.1 479 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.8e-168 596.7 422 66.4
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.8e-168 596.7 512 62.3
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.2e-166 589.7 368 75.8
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.4e-165 587.0 526 61.2
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.5e-165 586.3 428 65.2
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.2e-165 585.9 484 62.6
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.2e-164 583.9 355 80.8
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.1e-164 581.6 424 64.4
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-163 580.5 599 55.1
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.8e-163 580.1 554 59.6
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.3e-162 575.5 441 68.0
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.2e-161 573.2 417 65.9
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 3.4e-159 565.8 547 60.0
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 3.7e-153 545.8 539 57.1
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 7.0e-152 541.6 509 57.2
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.0e-150 537.7 474 63.3
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.9e-150 536.2 368 69.6
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.2e-148 530.8 523 58.3
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 8.0e-148 528.1 477 60.8
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 3.3e-146 522.7 507 56.6
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 2.2e-145 520.0 354 70.1
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.4e-144 517.3 398 68.6
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.1e-144 515.8 432 63.4
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.6e-143 513.1 362 72.4
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.2e-142 510.0 444 62.8
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.0e-142 508.8 325 77.2
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 1.6e-140 503.8 314 80.3
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 8.0e-140 501.5 350 71.4
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 8.8e-139 498.0 362 71.0
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.4e-138 495.7 481 55.1
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.1e-133 481.1 446 59.6
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.8e-131 473.8 405 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.5e-125 453.4 354 62.4
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.3e-115 420.2 394 60.7
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 9.8e-114 414.8 287 73.2
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.0e-102 378.3 210 84.8
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.2e-96 356.7 434 45.2
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.8e-79 298.9 318 55.3
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.0e-78 298.5 302 58.6
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 3.4e-74 283.5 306 54.6
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 6.0e-71 272.7 149 81.2
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 7.9e-71 272.3 253 62.8
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.0e-66 257.7 155 81.9
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.9e-62 243.4 193 58.0
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-61 241.5 421 39.4
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.9e-57 227.3 408 34.3
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.1e-56 225.3 166 59.6
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 4.2e-56 223.4 220 60.5
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.3e-52 211.8 462 32.5
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.0e-41 173.3 101 77.2
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.4e-19 102.1 125 52.8
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.8e-19 101.7 189 33.3
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 5.0e-17 93.6 49 85.7
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 6.5e-17 93.2 213 32.4
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 1.9e-16 91.7 54 75.9
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 1.4e-14 85.5 48 77.1
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 2.0e-10 71.6 63 50.8
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 7.7e-10 69.7 106 38.7
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.1e-08 65.9 39 71.8
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 3.6e-07 60.8 39 74.4
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.8e-06 58.5 37 75.7


User provided reference genes

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