Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.6e-267 925.6 500 100.0
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.6e-256 889.0 500 96.6
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.1e-223 778.1 493 85.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 6.8e-218 760.8 500 82.0
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 5.0e-213 744.6 500 80.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 6.1e-211 737.6 505 78.2
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.4e-210 736.5 491 79.4
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 5.7e-209 731.1 498 78.3
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 7.5e-209 730.7 499 78.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 4.9e-208 728.0 498 79.1
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.7e-205 719.5 499 78.0
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 7.3e-204 714.1 499 76.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 9.5e-204 713.8 499 76.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.6e-203 711.8 501 76.0
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 4.7e-203 711.4 497 76.5
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.7e-203 711.4 504 75.4
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 6.1e-203 711.1 496 76.4
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.2e-201 706.8 499 75.8
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-200 702.6 519 73.8
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 3.7e-200 701.8 503 75.7
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.9e-200 701.4 502 75.9
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 4.1e-199 698.4 499 76.8
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 4.1e-199 698.4 496 76.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 9.2e-199 697.2 500 75.2
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.2e-199 697.2 502 75.5
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.8e-198 694.1 529 72.0
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.3e-197 692.6 494 75.9
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 3.9e-197 691.8 500 76.4
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.0e-197 691.4 502 75.1
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.5e-196 689.9 493 75.7
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.5e-196 689.1 502 74.7
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.5e-196 689.1 500 76.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.2e-195 686.8 502 75.9
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-194 683.3 505 73.7
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.4e-194 683.3 484 77.9
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 6.8e-194 681.0 495 75.6
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.0e-193 679.5 495 75.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 9.8e-193 677.2 502 74.5
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.7e-192 676.4 498 74.1
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.9e-192 675.6 495 72.3
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.7e-192 675.2 502 74.1
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.2e-191 672.2 499 74.1
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.2e-191 672.2 468 77.1
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.6e-190 669.8 499 72.3
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 4.6e-190 668.3 495 74.3
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 7.8e-190 667.5 499 73.7
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 3.3e-188 662.1 485 75.1
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 4.3e-188 661.8 493 71.8
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.6e-188 661.4 496 73.0
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 5.6e-188 661.4 499 72.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.2e-187 660.2 499 72.7
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.1e-187 659.4 499 72.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 8.1e-187 657.5 501 73.1
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 8.1e-187 657.5 523 70.7
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.1e-186 655.6 506 73.3
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 4.0e-186 655.2 497 72.8
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 5.2e-186 654.8 493 72.0
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.2e-185 653.7 500 73.0
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.7e-184 649.8 490 72.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 3.7e-184 648.7 490 72.7
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.3e-184 647.5 496 70.2
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 3.2e-183 645.6 497 72.2
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 9.2e-183 644.0 496 72.6
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.2e-182 643.7 507 72.4
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.2e-182 643.7 499 71.1
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.6e-182 643.3 501 67.9
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.7e-181 639.8 500 71.2
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-180 637.1 472 74.8
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 9.5e-180 634.0 496 71.0
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.1e-179 632.9 499 68.3
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.8e-178 629.8 500 69.6
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 6.8e-178 627.9 501 70.5
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.2e-177 627.1 498 70.1
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 2.0e-177 626.3 506 68.4
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.6e-177 625.9 512 67.0
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 3.8e-176 622.1 495 69.7
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 6.4e-176 621.3 439 76.1
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.9e-175 619.8 494 68.6
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.6e-174 616.7 420 79.8
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.6e-174 616.7 500 70.6
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 6.0e-174 614.8 486 70.4
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.7e-173 613.2 499 68.5
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 3.9e-173 612.1 483 69.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 5.1e-173 611.7 504 66.7
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-172 609.8 521 67.2
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 9.6e-172 607.4 487 68.6
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 4.7e-171 605.1 505 66.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 2.4e-170 602.8 504 66.1
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 4.0e-170 602.1 505 66.1
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 9.0e-170 600.9 505 65.9
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.0e-169 599.7 505 65.5
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.0e-169 599.7 489 67.7
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.6e-169 599.4 504 66.3
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 7.6e-169 597.8 493 67.5
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 4.9e-168 595.1 508 66.5
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 7.1e-167 591.3 508 65.4
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.5e-164 582.8 504 64.7
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 9.6e-164 580.9 502 64.5
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.8e-163 579.3 502 64.3
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 5.8e-161 571.6 488 66.8
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.3e-160 570.5 489 64.4
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 7.4e-156 554.7 528 63.6
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.3e-155 553.9 439 69.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.8e-153 545.0 380 77.9
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.7e-150 536.2 482 60.8
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.9e-150 534.6 492 63.0
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.4e-148 528.1 356 80.6
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.2e-144 516.5 480 61.5
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.8e-144 515.8 454 66.7
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.6e-134 483.8 487 59.8
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 3.6e-134 482.6 495 57.0
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 4.6e-134 482.3 403 64.8
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.1e-130 469.2 389 65.3
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 4.5e-129 465.7 486 57.0
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.3e-120 437.6 393 66.7
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 3.9e-117 426.0 373 66.2
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-110 404.4 490 53.1
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 9.8e-100 368.2 382 58.1
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 9.8e-100 368.2 382 58.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.6e-94 350.9 206 85.9
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.0e-93 348.2 425 50.4
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.3e-91 341.3 356 56.7
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 3.5e-89 333.2 324 55.6
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.9e-87 327.4 268 72.0
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.0e-85 321.6 393 51.1
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.4e-82 309.3 219 75.8
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.8e-78 297.0 430 43.0
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.1e-71 275.0 221 67.9
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.1e-63 248.4 276 57.6
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.2e-59 234.2 403 39.5
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.3e-58 228.8 205 65.4
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 9.0e-53 212.2 435 35.4
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.2e-50 203.8 339 38.6
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 8.1e-46 189.1 132 72.0
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.4e-45 187.6 164 64.6
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.1e-38 164.5 96 83.3
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.8e-37 161.4 106 69.8
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.0e-35 155.6 91 84.6
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.9e-32 143.7 290 38.3
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.6e-30 138.3 87 78.2
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.8e-21 108.2 151 46.4
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 3.1e-21 107.5 122 52.5
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.9e-21 106.3 99 53.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 9.0e-21 105.9 185 40.0
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-11 75.1 65 56.9
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.8e-11 73.9 61 62.3
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.8e-11 73.9 61 62.3
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.1e-10 72.4 71 59.2
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.6e-09 68.6 61 59.0
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 7.9e-09 66.2 105 45.7
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.4e-08 65.5 190 34.2
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 4.4e-07 60.5 93 36.6
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 7.4e-07 59.7 50 72.0
SEGI_40770 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 3.7e-06 57.4 50 64.0


User provided reference genes

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